Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 3e-14 seq4 89.7 1e-12 >seq11 Length=2627280 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 |||||||| || || || ||||| || || | | || |||| || | |||||| ||| Sbjct 280441 GTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCCAACTGCTTTCCT 280382 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 | | || || | || ||||| || || || ||||| || || | ||||||| ||| Sbjct 280381 GAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTCAATTTTTGACTTA 280322 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || ||| ||| || || || ||||| || ||||| | || ||||| || || ||| Sbjct 280321 ACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGGTTAATGTT 280262 Query 195124 TTTACGAACACTTGCATTTATGGT 195147 |||||||| | ||||||| |||| Sbjct 280261 TTTACGAATATCTGCATTT-TGGT 280239 >seq4 Length=1862670 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 125523 CCTTCCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAA 125582 |||||| || |||||||| || ||||| ||| ||| || ||||||| |||||| || Sbjct 1409185 CCTTCCCAAAAAACACGGAAGAGGAGGTCAAAGTGCGTTACGTTTTGCCAGACTTAGATT 1409244 Query 125583 AGAAAAGAGACACAACTATTTGAGGAAAGTCGCAGAGAATGCAACTCAATGTTTTTTGCA 125642 |||||| |||||||| ||||| || ||||| || || || ||| ||||||| | Sbjct 1409245 AGAAAAAAGACACAATTATTTAAGAAAAGTTGCTGAAGTAGCTACTTC-TGTTTTTATAA 1409303 Query 125643 -AGACAACAAGTGCAACGTCATTGGGATTGTCATTGCTGGATCGGCAGAGTTCAAAACAA 125701 | | ||||| |||||| || || ||| |||| ||| ||||| ||||| | Sbjct 1409304 CAAATGACAAGATCAACGTGTCAGGAATAGTCCTTGCCGGAAGTGCAGACTTCAAGAATG 1409363 Query 125702 AGCTTCTGGAATCTGACCTTTTCGACCAAAG 125732 | || || | ||| | ||||||||||| Sbjct 1409364 ACCTCATGCATAGTGATATGTTCGACCAAAG 1409394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481400986738