Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06]
14 sequences; 27,685,530 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq4 95.1 8e-15
>seq4
Length=1862670
Score = 95.1 bits (104), Expect = 8e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|| ||||| | ||| ||| || || ||||||||||| || | | ||| | |||| |||
Sbjct 693177 ACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATCTTCC 693118
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||||| || ||||| || |||| || ||||| | || | ||||| ||||| |
Sbjct 693117 AATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGA 693058
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| ||| ||| || | | |||| || | ||| || || | || ||||| |||
Sbjct 693057 ATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGTCTTT 692998
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| || |||||||| || || ||||||
Sbjct 692997 CCCGTTAGGGTCTTCACGAAAATTTGCATA 692968
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|| ||||| | ||| ||| || || ||||| ||||| || | | ||| | |||| |||
Sbjct 692721 ACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCTTCC 692662
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||||| || ||||| || |||| || ||||| | || | ||||| ||||| |
Sbjct 692661 AATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGA 692602
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || || || | | |||| || | ||| || || | || || || |||
Sbjct 692601 ATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATAGTCTTT 692542
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| ||||||||||| || || ||||||
Sbjct 692541 CCCGTTAGAGTCTTCACGAAAATTTGCATA 692512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633544609392
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |