Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4 158 2e-33 >seq4 Length=1862670 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || ||||| | || ||||||| || || || || Sbjct 692749 AATTTGCATACCACCTCTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTT 692690 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || ||||| ||| || |||||||| || |||||||| | ||||||||| Sbjct 692689 GTAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTG 692630 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || ||||| ||||| || || ||||||| || | |||| ||| || ||||| Sbjct 692629 GTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGA 692570 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | ||| ||||| || || ||||| || || || || |||||||| Sbjct 692569 TGACTCCACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 692513 Score = 156 bits (172), Expect = 8e-33 Identities = 179/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 193120 AAGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAA 193179 ||| || ||| | ||||||||||| || ||||| | || || || | || || | Sbjct 693209 AAGGAAATTAAAAACCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGA 693150 Query 193180 TATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCT 193239 | |||||||| || || ||||| ||| || |||||||| || |||||||| | ||||| Sbjct 693149 TGTTATAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCT 693090 Query 193240 GTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTAT 193299 |||| ||||| || ||||| ||||| || || ||||| | ||||| |||| ||| || | Sbjct 693089 GTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGT 693030 Query 193300 CGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 |||| ||||| || || | ||| || || || || ||||| || || || || ||||||| Sbjct 693029 CGGATGACTCCACGTCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCA 692970 Query 193360 T 193360 | Sbjct 692969 T 692969 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||| || || | |||| || || || | || || || || Sbjct 692977 AATTTGCATACCACCTCGTAAACGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTT 692918 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || ||||| ||| ||||||||||| || |||||||| | ||| || || Sbjct 692917 GTAGTCAGACAAGGTTCTTCCATCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTG 692858 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || ||||| ||||| || || ||||| | || | |||| ||| || || || Sbjct 692857 ATCAGGGGGGATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGA 692798 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | ||| ||||| || || ||||| ||||| || || |||||||| Sbjct 692797 TGACTCCACATCCAAAGTGATAGTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 692741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654242560480