Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4 156 8e-33 seq13 104 5e-17 seq11 102 2e-16 >seq4 Length=1862670 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||||||||| ||||||| |||||| ||||| || | || || ||| ||||| || Sbjct 693199 AAAACCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTC 693140 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| || |||| | |||| ||||||||||| |||||||| || | ||||||||| ||||| Sbjct 693139 AGACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGG 693080 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| ||||| ||||| || || ||||| ||||||||| || | || || || || Sbjct 693079 TGGGATTCCCTCTTTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTC 693020 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||| || || |||| || || | || || ||||| Sbjct 693019 CACGTCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 692969 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||||| |||||| ||||| |||| || || ||| || || ||| Sbjct 692742 ATACCACCTCTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCA 692683 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | |||| ||||||||||| |||||||| || | ||||||||| |||||| Sbjct 692682 GACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGT 692623 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || || ||||| || ||||| || | || || || || Sbjct 692622 GGGATTCCCTCTTTGTCCTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCC 692563 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| || || || || |||| || || | || || ||||| Sbjct 692562 ACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 692513 >seq13 Length=1997354 Score = 104 bits (114), Expect = 5e-17 Identities = 181/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 ||||| || |||| | || || || | | ||| | ||| || || || || |||||| Sbjct 1647932 ATTAACAAGCTATACGTCTCTGAGTGGATATTTTCAACAGCAATCTGGAAGGAGTAAAAT 1647873 Query 50166 TGTCTTGCTTCTGAATACTGAACTTCG-GAAAAGAATCGTTCAACTAAATTCTCAGATAC 50224 | |||| || | | || |||| | | ||| | | | | ||||||| || | || Sbjct 1647872 TTCTTTGCCTCCGTAATTTGCACTTGGCGTAAAAATTTGCTTG-CTAAATTTTCCAACAC 1647814 Query 50225 AATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATC 50284 ||| |||||| ||||||||||| || || || | ||| || |||||||||||||| || Sbjct 1647813 AATTCCATCACTCGCTGCGAAGAAAGCCAACACATGTTTTATGAAATGTTTTTCATTTTC 1647754 Query 50285 TTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAA 50344 ||||| ||||| || || | |||| | || || || | |||||| |||||| || Sbjct 1647753 ATTTAATTTTTCGAAATCTTTCAAATCGCTAGACAAGTCAATTTCTTCAGCTGTCCAGAA 1647694 Query 50345 TGATGCTACGGATTTTTTATA 50365 || ||| | | |||||| || Sbjct 1647693 GGACGCTTCCGCTTTTTTGTA 1647673 >seq11 Length=2627280 Score = 102 bits (112), Expect = 2e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| ||||| || || || | | | |||| ||||| || |||||||| |||||||| | Sbjct 280401 CATCCTCCAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCT 280342 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| | ||||| || ||||| | || | || || | || || || || || | Sbjct 280341 TATCCTCAATTTTTGACTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGA 280282 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAAAA 192548 ||||||| || ||||||||||| | |||||||||||||| || |||| Sbjct 280281 TGGTTTTTCCGGTTAATGTTTTTACGAATATCTGCATTTTGGTAAAAAA 280233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479823408900