Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4 150 3e-31 seq11 113 8e-20 seq13 111 3e-19 >seq4 Length=1862670 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| || |||| |||||| ||||| || | || || || ||||| || Sbjct 693199 AAAACCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTC 693140 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || || | || | | || ||||||||||| ||||||||||| | ||||||||||||||| Sbjct 693139 AGACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGG 693080 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| ||||| ||||| || || ||||| ||||||||| || || || || || || Sbjct 693079 TGGGATTCCCTCTTTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTC 693020 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || || |||| || || | ||| || ||||| Sbjct 693019 CACGTCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 692969 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || |||| |||||| ||||| |||| || || || || || || Sbjct 692742 ATACCACCTCTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCA 692683 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || ||||||||||| ||||||||||| | |||||||||||||||| Sbjct 692682 GACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGT 692623 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || ||||| || ||||| || || || || || || Sbjct 692622 GGGATTCCCTCTTTGTCCTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCC 692563 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| || || || || |||| || || | ||| || ||||| Sbjct 692562 ACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 692513 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| | ||||| || || ||||| || | || || || || || || Sbjct 692514 ATACCACCTCGTAAACGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCA 692455 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || || ||||| || ||||||||||| | |||||||||||||||| Sbjct 692454 GACAAGGTTCTTCCATCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGT 692395 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || |||||| || ||||| || || || || || || Sbjct 692394 GGGATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCGGATGACTCC 692335 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || | ||| |||||||| || Sbjct 692334 ACGTCCAAAGTGATGGTTTTTCC 692312 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| | ||||| || || ||||| || | || || || || || || Sbjct 692970 ATACCACCTCGTAAACGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCA 692911 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || || |||||||| ||||||||||| | ||| || || ||||| Sbjct 692910 GACAAGGTTCTTCCATCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGG 692851 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || |||||| || ||||| || || || || || || Sbjct 692850 GGGATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCC 692791 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| || || || || |||| ||||| | ||| || ||||| Sbjct 692790 ACATCCAAAGTGATAGTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 692741 >seq11 Length=2627280 Score = 113 bits (124), Expect = 8e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| || || || | | | |||| ||||| ||||||||||| |||||||| ||| Sbjct 280399 TCCTCCAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTA 280340 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || | ||||| || ||||| | || || || || | || || || || || ||| Sbjct 280339 TCCTCAATTTTTGACTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATG 280280 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAAAA 172081 ||||| || ||||||||||| | ||||||||||||||| || |||| Sbjct 280279 GTTTTTCCGGTTAATGTTTTTACGAATATCTGCATTTTGGTAAAAAA 280233 >seq13 Length=1997354 Score = 111 bits (122), Expect = 3e-19 Identities = 176/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 39419 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTC 39478 |||| | || || || | | ||| | ||| || || || || ||||||| | |||| || Sbjct 1647921 ATACGTCTCTGAGTGGATATTTTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCCTC 1647862 Query 39479 TGAATACTGAACTTCG-GAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAG 39537 | | || |||| | | ||| | | | | ||||||| || | ||||| |||||| Sbjct 1647861 CGTAATTTGCACTTGGCGTAAAAATTTGCTTG-CTAAATTTTCCAACACAATTCCATCAC 1647803 Query 39538 ATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTT 39597 ||||||||||| || || |||| ||| || |||||||||||||| || ||||| |||| Sbjct 1647802 TCGCTGCGAAGAAAGCCAACACATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTT 1647743 Query 39598 CCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGG 39657 | || || | |||| | || || || | |||||| |||||| || || ||| | | Sbjct 1647742 CGAAATCTTTCAAATCGCTAGACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCG 1647683 Query 39658 ATTTTTTATA 39667 |||||| || Sbjct 1647682 CTTTTTTGTA 1647673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135841601200