Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 210 6e-49 seq9 113 1e-19 seq12 96.9 1e-14 seq14 84.2 6e-11 >seq4 Length=1862670 Score = 210 bits (232), Expect = 6e-49 Identities = 623/952 (65%), Gaps = 19/952 (2%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTC-GTCGCTGTATTCT--ACAATCTCA 155645 || || |||| ||||||||| || | | | ||| | | |||| || | ||||||| Sbjct 757466 ATGGAGGCCAAATTACATACGGC---CACTTCGTCTGGGGAAGTATACTCAATAATCTCA 757410 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 || || |||||| || || || || || || ||||| ||||| || || ||||||| Sbjct 757409 CAACAGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACAA 757350 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGC 155765 | ||| || || | ||||| || || || || ||||| | || ||| | | Sbjct 757349 GAATCTTTATACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAAC 757290 Query 155766 CAGAGGTCACGGGC-ATTA-ATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATAT 155823 || || || | || | | | || || ||| | ||||| ||||||||| | | Sbjct 757289 CATAGATCTTGCGCCAGGACAGTT--TTTTTGCCCATACCTTCTTCCTCATATTTTAAGT 757232 Query 155824 ACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAA 155883 | ||| || | | |||||||| || | ||||| | || || || | || ||||| | Sbjct 757231 ATAGCTTTTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACA 757172 Query 155884 ACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 || | |||| | | ||| | |||| | || ||| || | ||| |||| | || Sbjct 757171 TCAAAGTCCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAG 757112 Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGA 156003 ||||||||||||| || || || ||||| | |||||||| || || || |||| | Sbjct 757111 CATAGAAAAGGTCTCTAGCTCTTAGTTCCTCTTTCCCGTGATTTTTACGAAGGTCTAGAA 757052 Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT-- 156061 |||| |||||| | || ||| || | |||| ||||| || || ||||| Sbjct 757051 ATTCGAAAATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCTTTC 756992 Query 156062 -GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120 |||||| || |||||||| | ||| || | |||||| || | ||||| || | | | Sbjct 756991 CGCCACCTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTAACC 756932 Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 | ||||| | || |||||||| | ||| | || | | || || || | Sbjct 756931 CGTTGGATATTCCGTTGGTTCCTCTAATGTAGGAGTTTTGTCCTCTAATATCCTGTACCG 756872 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 || |||||| ||||| | | ||| ||| | ||||| | || | || | ||||| Sbjct 756871 CTACTCCAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAA 756812 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 |||||||||| |||||| ||| ||| | || || | || || | ||| |||| | Sbjct 756811 TACCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGGTCTGG 756752 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAAT 156360 | || |||| ||||| | ||||||||||| || ||||||| || | ||||||| || Sbjct 756751 GCGTCCCAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGACATAAGAT 756692 Query 156361 CGTATGTCTCCTTAATCTTCTCAAGATTAGACCC---GTGAATACAGATAGAGACCCTCA 156417 || ||||| || || |||| ||| ||| || | || || || |||| Sbjct 756691 GATACGTCTCTAGCGCTTTTTCCAGAT---CCCCAATGTGGATGCCAATGGATACTCTCA 756635 Query 156418 TCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTT 156477 || || ||| || || | || | |||| ||||| ||||| || ||||| | | || Sbjct 756634 TCAGCAGATGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGACCTTT 756575 Query 156478 CCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAAT 156529 ||| ||| || ||||| || ||||| | |||||| | |||| ||||| Sbjct 756574 CCAAAGTCTTGAACCCAAAGTAATCGTAATTAAAATCCCTCGTGTAGTCAAT 756523 >seq9 Length=2583428 Score = 113 bits (124), Expect = 1e-19 Identities = 311/465 (67%), Gaps = 15/465 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||| || || || | || || | |||||||||| |||||| ||| ||| || || Sbjct 838826 CTATCGAATCTGCCTGGTCGGGTAATGGCTGGGTCTAGGATATCGACTCGGTTGGTACCT 838885 Query 288910 GCCAATACAACAA---TAG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA-ATTT 288964 || || || || | || ||||| | | ||| |||||||| || | || |||| Sbjct 838886 GCTAAAACTACTACCTTATCATTCGATGTATGGAAA-CCATCCAT-CTCGACCAACATTT 838943 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTG---AATCACCCGAATCGCTCC 289021 | || || || | ||| |||||||||||| || | || || ||||| | | || Sbjct 838944 GGTTTAGCGTATTTTCTCTTTCATCATTTCCCCCACCTGCGAAACCACCCT--TGGATC- 839000 Query 289022 tttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCG 289081 | || |||| || ||||| |||||||| || || || | |||| | || || ||||| Sbjct 839001 TCTTCCTACCCACTGCATCTATTTCGTCTATAAATATTATGGACGGTGCATGTTTTCTCG 839060 Query 289082 CAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATT 289141 | |||||||||||||| || | ||| | ||| | |||||| | | ||| | ||| | Sbjct 839061 CTTGAGCAAATAATTCTCTCACTCTGGACGGTCCTATGCCAACAAAAACTTCGATAAAGT 839120 Query 289142 CAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 || | | || | || || | ||||| ||||| |||||||| || | || || | Sbjct 839121 CACTACCACTTATGTTAAAAAAAGGGACATTAGCTTCCCCTGCTACAGCTTTGGCTAGTA 839180 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 ||| || ||||| || || | || || ||| | || || || | |||||||| Sbjct 839181 ATGTTTTTCCTGTCCCTGGGGCACCACATAGAAGAGCCCCTTTGGGCATCTTTGCCCCTA 839240 Query 289262 CAGACTTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCC 289305 | | ||| || |||| |||| ||||| || |||| |||| Sbjct 839241 ACGTTTCATACTT-AGAGGGGGCTTTCAAAAAATCAACAAATTCC 839284 >seq12 Length=4930710 Score = 96.9 bits (106), Expect = 1e-14 Identities = 215/323 (67%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||||||| |||||||| | | ||| || | || || | | || | Sbjct 3560518 CCAACTGCATCAATTTCATCAATGAAGACGATACATGGCGCATGTTTTTTGGCTGCTTGG 3560459 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | ||||||| | || |||| ||| || ||||||| ||||||| || | Sbjct 3560458 AAGAGCTCTCTTATCCTTCTGGCACCAACACCTACGAACATTTCCTCAAATTCGGAGCCT 3560399 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 ||| |||| ||||| | ||||| ||||| || |||| || || || | | || || Sbjct 3560398 GATGCTTGTATGAAAGGAACATTCGCTTCCCCCGCTATCGCTCTAGCAATTAACGTTTTT 3560339 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 ||||| || ||| || | || | ||||| |||| || || || || Sbjct 3560338 CCTGTACCCGGTTCACCGGACAGGAGTATCCCCTTCGGTAACTTGGCACCTATTTTTGTA 3560279 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 |||| |||| |||||||| | || | ||||| |||||||| | ||| | ||||| Sbjct 3560278 AATTTATCAGAATTCTTTAAATAATCAATTATTTCTTCAAGTTCTTGTTTCACTTCATCG 3560219 Query 289330 CATCCTGCTACATCAGCAAAAGT 289352 || ||| |||||| ||||| || Sbjct 3560218 CACCCTTTTACATCTGCAAAGGT 3560196 >seq14 Length=1987456 Score = 84.2 bits (92), Expect = 6e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 289039 TCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCT 289098 ||||||||||| || ||||| | |||||| || || ||||| || |||||| |||| Sbjct 252325 TCAATTTCGTCCATAAAAATAATGGACGGAGCATGTTCCCTCGCCATGACAAATAGTTCT 252266 Query 289099 CTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA 289158 || || || ||| ||| | ||| ||| ||||| ||| ||| |||| || Sbjct 252265 CTCACCATTCTTGATCCTTCACCGATGTACTTTTGTACAAGTTCCGAACCGGACACCCTT 252206 Query 289159 ATGAATGTTACATT-TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCC 289217 || || | |||||| || | | ||||||||| || || || || || ||||| || || Sbjct 252205 AT-AAAGGTACATTCTGTATGGTGTGCTACTGCTCTGGCTAGGAGGGTTTTACCAGTACC 252147 Query 289218 AGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 ||||| || | || || || ||||| || Sbjct 252146 TGGTGGGCCATATAGTAATACCCCCTTAGG 252117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817335992718