Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq4 86.0 5e-12 >seq11 Length=2627280 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || || ||||| ||||| || |||||||| ||| | || |||||| Sbjct 280242 AAAATGCAGATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCA 280301 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || | | | || || ||| |||| ||||| ||||| | || || Sbjct 280302 TCCGAAACGATTAGGAATGTTAAGTCAAAAATTGAGGATAAGGAAGGAATCCCACCTGAC 280361 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || ||| | || || ||| ||||||| | || |||| |||||| Sbjct 280362 CAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGACTAC 280421 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || |||||||| || |||||| |||| Sbjct 280422 AACATCCAGAAGGAGTCCACCTTGCACTTGGT 280453 >seq4 Length=1862670 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || ||||| |||| || || || || || | || |||| | Sbjct 692741 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 692800 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || ||| || ||||| || | ||| |||||| Sbjct 692801 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 692860 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||| |||| ||| || ||||| | ||||| | | ||| || | ||||||||| Sbjct 692861 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 692920 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||| || ||||| ||| |||| || | || ||||| || Sbjct 692921 ATCCAAAAGGAATCCACGTTACACTTGGTCTTACGTTTACGAGGTGG 692967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876731941646