Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4 131 1e-25 >seq4 Length=1862670 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| | ||||| || | ||||||||| ||||| ||||| || || | | ||| | Sbjct 692958 AAACGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTT 692899 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | ||||||||||||| | || | |||||||||||| || || || |||||| Sbjct 692898 CCATCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCT 692839 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 ||||| || |||||| | || ||| |||| | |||||||| || || || | ||| Sbjct 692838 TTGTCCTG-AATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGT 692780 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || |||| |||||| || || || ||||| Sbjct 692779 GATAGTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 692741 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| || || || || | |||||||| ||||| |||||||| || | Sbjct 693195 CCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGAC 693136 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | ||||||||||||| | || | ||| || || || || || Sbjct 693135 AAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGG 693076 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || |||||| | ||| ||| |||| | ||||| || || || Sbjct 693075 ATTCCCTCTTTGTCCTG-AATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCAC 693017 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || || || |||| ||| || || || || ||||| Sbjct 693016 GTCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 692969 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| || || || || | || ||||| ||||| ||||| || || | Sbjct 692739 CCACCTCTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGAC 692680 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | ||||||||||||| | || | ||| || || || || || Sbjct 692679 AAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGTGGG 692620 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || |||||| | || ||| |||| | ||||| || || || Sbjct 692619 ATTCCCTCTTTGTCCTG-AATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCAC 692561 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| ||||| || || |||| || || || || || ||||| Sbjct 692560 GTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 692513 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| | |||||| || | |||||||| ||||| ||||| || || | | ||| | Sbjct 692502 AAACGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTT 692443 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | ||| ||||||||| | || | ||| || || || || || || |||||| Sbjct 692442 CCATCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCT 692383 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 ||||| || |||||| | || ||| |||| | ||||| || || || || | ||| Sbjct 692382 TTGTCCTG-AATTTTAGCCTTCACATTTTCAATTGTGTCGGATGACTCCACGTCCAAAGT 692324 Query 29748 TATAGTTTTGCC 29759 || ||||| || Sbjct 692323 GATGGTTTTTCC 692312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219134271974