Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4 145 2e-29 >seq4 Length=1862670 Score = 145 bits (160), Expect = 2e-29 Identities = 433/659 (66%), Gaps = 17/659 (3%) Strand=Plus/Plus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||| || | || || || ||||| | || || | |||||| ||||||||||||| || Sbjct 756760 CAAATGTCGTCCTGTTTCCTTCTCTGTATGAAAGCTGATTCGATTGAAGGTATTTTCGAG 756819 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 | || ||| | || || ||| |||| |||| |||||||| | || || Sbjct 756820 ACGCTGAAACAGTGCGCCCTGATTAGCAAAACGGCTGGTGGAATTGGAGTAGCGGTACAG 756879 Query 110631 GATATTCGCT--CAAAAGGAGCAAAT-ATCGCAACAGCGAAGGGTGCTTCAACTGGACTT 110687 |||||| | ||||| | || | | ||| | | || | |||| || | Sbjct 756880 GATATTAGAGGACAAAACTCCTACATTAGAGGAAC--CAACGGAATATCCAACGGGT-TA 756936 Query 110688 GTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAG 110744 || |||||| | || || ||||| || || || | |||||| | |||||||| ||| Sbjct 756937 GTGCCAATGCTGAGGGTGTTCAATGATACAGCTAGATATGTAGACCAAGGTGGCGGAAAG 756996 Query 110745 AGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTA 110804 ||||| || || ||||| | || ||||||| ||||| |||||||| || ||||| || Sbjct 756997 AGAAAGGGATCCTTTGCAGTGTACATCGAACCATGGCACTCAGATATTTTCGAATTTCTA 757056 Query 110805 GAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATG 110864 || |||||||||||||| || || |||| |||||| | || | || ||||| | Sbjct 757057 GACCTTCGTAAAAATCACGGGAAAGAGGAACTAAGAGCTAGAGACCTTTTCTATGCTGTA 757116 Query 110865 TGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 ||| | | || | |||||||| | || |||||||| | ||| || | ||||| Sbjct 757117 TGGGTCCCTGACCTTTTCATGAAGAGAGTAAAAGAAAATCAGAATTGGACTTTGATGTGC 757176 Query 110925 CCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984 || || | ||| || || ||| | || | || || ||| | || ||| | Sbjct 757177 CCGAATGAATGTCCAGGGTTAAGTGAGTCTTGGGGTGAGGAATTCGAAAAGCTATACTTA 757236 Query 110985 AAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTCAAGAACTTTGGTTC 111041 |||||||| ||||||| | | ||||| ||| | | || ||||| || ||||| Sbjct 757237 AAATATGAGGAAGAAGGTA---TGGGCAAAAAAACTGTCCTGGCGCAAGATCTATGGTTT 757293 Query 111042 AAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATT 111101 || | || || | ||||| || ||| || || |||||||||||| | | Sbjct 757294 GCCATTTTGCAAAGTCAGATAGAAACGGGTGTTCCCTACATGTTGTATAAAGATTCTTGT 757353 Query 111102 AATCGC-AAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 || ||| || || || |||| ||| || || || || || | |||||| | || |||| Sbjct 757354 AA-CGCGAAGTCCAACCAAAAGAACTTGGGGACGATAAAATGTAGTAACCTCTGTTGTG 757411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812587115454