Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4 105 4e-18 >seq4 Length=1862670 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||||| || || |||| ||| || ||||| ||||| || || || Sbjct 693196 ACCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGA 693137 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || ||||||||||| || |||||||| | | ||| || || | || Sbjct 693136 CAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGG 693077 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| ||||||| | || |||| || | |||||| ||| |||| Sbjct 693076 GATTCCCTCTTTGTCCTGAATTTTC-GCTTTTACATTTTCAATCGTGTCGGATGACTCCA 693018 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| | ||||| || || || |||| || || || || || |||||| Sbjct 693017 CGTCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCATA 692968 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| |||||||||||||| |||| ||| || ||||| |||||||| || || Sbjct 692512 ACCACCTCGTAAACGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCAGA 692453 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || || ||||| || || |||||||| | | ||| || || | || Sbjct 692452 CAAGGTTCTTCCATCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGG 692393 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| |||||| ||| |||| || | |||||| ||| |||| Sbjct 692392 GATTCCCTCTTTGTCCTGAATTTTAGCCTTC-ACATTTTCAATTGTGTCGGATGACTCCA 692334 Query 33701 CGTCAACCGTGATCGTTTTACCTG 33724 |||| | ||||| ||||| |||| Sbjct 692333 CGTCCAAAGTGATGGTTTTTCCTG 692310 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||||| || || |||| || || ||||| |||||||| || || Sbjct 692740 ACCACCTCTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGA 692681 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || ||||||||||| || |||||||| | | ||| || || | || Sbjct 692680 CAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGTGG 692621 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| |||||| ||| |||| || | |||||| ||| |||| Sbjct 692620 GATTCCCTCTTTGTCCTGAATTTTGGCCTTC-ACATTTTCAATCGTGTCGGATGACTCCA 692562 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| | ||||| || || || |||| || || || || || |||||| Sbjct 692561 CGTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCATA 692512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703943914880