Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 104 6e-17 >seq4 Length=1862670 Score = 104 bits (114), Expect = 6e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 206195 CAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAA 206254 |||||||||| ||||||||||| ||||| || |||||| | ||| || ||| | Sbjct 692310 CAGGAAAAACCATCACTTTGGACGTGGAGTCATCCGACACAATTGAAAATGTGAAGGCTA 692369 Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 | ||||| || ||||| ||||| || ||| || |||||||| || || || |||| Sbjct 692370 AAATTCAGGACAAAGAGGGAATCCCACCTGACCAACAGAGACTTATTTTTGCTGGCAAGC 692429 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 | || || |||||||| || ||| | || |||||| |||| || || || || Sbjct 692430 AATTAGAGGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCAC 692481 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||||||||| ||||| || ||||| | ||| Sbjct 692528 AAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCCGACACGATTGAAAAT 692587 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || ||||| ||||| || ||| || ||||| || || Sbjct 692588 GTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAACAGAGACTCATTTTT 692647 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || |||||||||||||| || ||| | || |||||| |||| || || ||| Sbjct 692648 GCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCT 692707 Query 206365 AC 206366 || Sbjct 692708 AC 692709 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || ||||||||||| ||||| ||||||||| | ||| Sbjct 692756 AAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCTGACACAATTGAAAAT 692815 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || ||||| ||||| || || |||||||| || || Sbjct 692816 GTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAGCAAAGACTCATTTTT 692875 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || || || |||||||| || ||| | || |||||| |||| || || || Sbjct 692876 GCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCC 692935 Query 206365 AC 206366 || Sbjct 692936 AC 692937 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||||||||| ||||| || ||||| | ||| Sbjct 692984 AAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCCGACACGATTGAAAAT 693043 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| ||||| || ||||| ||||| || ||| || |||||||| || Sbjct 693044 GTAAAAGCGAAA-ATTCAGGACAAAGAGGGAATCCCACCTGACCAACAGAGACTTATTTT 693102 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || |||||||||||||| || ||| | || || ||| |||| || || || Sbjct 693103 TGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAACATCCAAAAGGAATC 693162 Query 206364 TAC 206366 || Sbjct 693163 CAC 693165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820588010894