Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 125 7e-24 seq11 98.7 1e-15 >seq4 Length=1862670 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||||||| || | || | ||||| || ||||||||||| ||||||||||| | | Sbjct 692739 CCACCTCTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGAC 692680 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | |||||||| |||||||| | | ||| || || || || Sbjct 692679 AAGGTTCTTCCA-TCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGTGG 692621 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || ||||| || |||||||| || || || | |||||||| || ||||| Sbjct 692620 GATTCCCTCTTTGTCCTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCAC 692561 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| | ||| || || || || |||| ||| || |||||||||||||| Sbjct 692560 GTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 692513 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 || || || | ||||| ||||||||||||||| ||||||||||| | ||| | | | | Sbjct 692955 CGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCA 692896 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || | |||||||| |||||||| | | |||||||| || || || || ||||| Sbjct 692895 -TCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTT 692837 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || |||||||| || || || | |||||| || || ||||| || | ||| || Sbjct 692836 GTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGAT 692777 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||| ||||| |||||||||||||| Sbjct 692776 AGTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 692741 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || || | || | ||||| |||||||||||||| ||||| ||||| | | Sbjct 693195 CCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGAC 693136 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | |||||||| |||||||| | | ||| || || || || Sbjct 693135 AAGGTTCTTCCA-TCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGG 693077 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || ||||| || |||||||| ||| || || | |||||||| || ||||| Sbjct 693076 GATTCCCTCTTTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCAC 693017 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| | ||| ||||| || || |||| || || |||||||||||||| Sbjct 693016 GTCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 692969 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 || ||||| | ||||| |||||||||||||| ||||||||||| | ||| | | | | Sbjct 692499 CGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCA 692440 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || | || ||||| |||||||| | | ||| || || || || || || ||||| Sbjct 692439 -TCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTT 692381 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || |||||||| || || || | ||||||||| || |||||||| | ||| || Sbjct 692380 GTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCGGATGACTCCACGTCCAAAGTGAT 692321 Query 134678 GGTTTTACC 134686 |||||| || Sbjct 692320 GGTTTTTCC 692312 >seq11 Length=2627280 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/204 (73%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 ||||| ||||| || ||||||||||| |||| ||| | || || | ||| || || Sbjct 280441 GTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACA-TCCTCCAACTGCTTTCC 280383 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 || | | || | | |||||| || || || || ||||| || || | ||||||| || Sbjct 280382 TGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTCAATTTTTGACTT 280323 Query 134636 GACCGCGTCC-AAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || ||| ||| || ||||| | ||||| || || || |||||||| |||||||| Sbjct 280322 AAC--ATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGGTTAAT 280265 Query 134694 GTTTTAACGAAAATTTGCATTTTG 134717 ||||| ||||| || ||||||||| Sbjct 280264 GTTTTTACGAATATCTGCATTTTG 280241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398311555280