Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 235 8e-57 seq13 161 1e-34 >seq4 Length=1862670 Score = 235 bits (260), Expect = 8e-57 Identities = 985/1528 (64%), Gaps = 55/1528 (4%) Strand=Plus/Minus Query 68748 GTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 |||||| ||||| || || ||||| | ||| || || || || |||||||| | || || Sbjct 758001 GTAAATGTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGA 757942 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 ||||| ||||||||||||| || | |||||| | || || | | || || | Sbjct 757941 AGCAGTAGGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGC 757882 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACA-----ACATTCCAAAGATCGTAT 68922 || | | | |||||||||| || | || | || |||||||| | ||| | Sbjct 757881 CTTCAATTTATCCCAATCCCAAT-ATTTGTTG-TCCACCTTGACATTCCACATGTCGAAC 757824 Query 68923 TGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCA 68982 || |||||||| | || || || | || || ||||||||||| | | || Sbjct 757823 TGAAGAATTCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACTTGT 757764 Query 68983 GCTAGTTCACA---ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 69039 || | ||| || || | ||| || ||| | ||||| |||||||||||||| | ||| Sbjct 757763 GCCAATTC-CATGGACAT--CTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTA 757707 Query 69040 TTGAGATCTTGTGCTTCTAGACTATCGAATGGATA-----ATGTAA-AAGAATAAATGCA 69093 || | || | || ||| |||| || ||| || ||| ||| || || | Sbjct 757706 TTTAATTCCTTCGC----AGA--ATCGGATTCATATGGGTATCTAAGAAGCATGAAGGTG 757653 Query 69094 TCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCT 69153 |||||||| || || || || || || || ||||| |||||||| || || | |||||| Sbjct 757652 TCTGCCAAGCCTTGTACTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCC 757593 Query 69154 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTT- 69212 || | | ||| || ||||| | |||||||||| | | || || || || ||| Sbjct 757592 TCCTGCACAGGGTAGTAATTCCTCTCTATAATTTGGTCCAAGTTACGTG-TAATAATTTT 757534 Query 69213 ---AACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAACAA--ACATATT- 69266 || ||| | ||||| ||||| ||| ||| | | || ||| ||| Sbjct 757533 GGTAATTTCGTAC---AGTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAATTT 757477 Query 69267 ---CAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTAT 69323 || || | || || | |||||| || || || || | | | ||| | || Sbjct 757476 GCACAACGCGATGGAGGCCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCAAT 757417 Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 ||||| ||| || ||||||||||| || ||||||| || | || || ||| Sbjct 757416 AATCTCACAACAGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGC 757357 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 |||||| | || || || | || | ||| ||| ||||| |||||| || | ||| Sbjct 757356 GTTACAAGAATCTTTATACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAAT 757297 Query 69444 AGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTC---ATA 69500 | ||| | || | | || | || || || | | | | ||| ||| ||| Sbjct 757296 GGCAAACCATA-GATCTT-GCGCC-AGGACAGTTTTTTTGCCCATACCTTCTTCCTCATA 757240 Query 69501 TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATT 69560 || | |||||| ||||||||| || |||||| ||| || || ||||||||||| Sbjct 757239 TTTTAAGTATAGCTTTTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATT 757180 Query 69561 TGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAAT 69620 || |||||||| | ||| | || || || |||| ||||| || || || || | Sbjct 757179 CGGGCACATCAAAGTCCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGAC 757120 Query 69621 CCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT-AttttttttA 69678 ||| | ||| ||| || || ||||| | ||| ||| || ||||| || |||||| | Sbjct 757119 CCATACAGC-ATAGAAAAGGTCTCTAGCTCTTAGTTCCTC-TTTCCCGTGATTTTTACGA 757062 Query 69679 AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCC 69738 || || ||||| || | |||||| || ||||||||||| | || | || | | |||| Sbjct 757061 AGGTCTAGAAATTCGAAAATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCC 757002 Query 69739 GGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATC 69798 || || || || || |||| ||||| || || | ||| | || |||||||| Sbjct 757001 TTTCTCTTTCCGCCACCTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATT 756942 Query 69799 GGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA--ACTTCCTCTTGCGCGAA 69856 || | | || || ||| | || || ||||| ||| || | || | | | | || Sbjct 756941 GGCACTAACCCGTTGGATATTCCGTTGGTTCCTCTAATGTAGGAGTT--TTGTCCTCTAA 756884 Query 69857 TATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCA 69916 ||| | | || || ||||| || ||| |||| || || || || |||||| Sbjct 756883 TATCCTGTACCGCTACTCCAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCA 756824 Query 69917 ATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACA 69976 || || | ||||| || || |||| || |||| ||||| |||||| |||| Sbjct 756823 GCGTCTCGAAAATACCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACA 756764 Query 69977 TTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTT 70036 |||| | || || | ||| || || ||||| | |||||| || || |||||| Sbjct 756763 TTTGCGGTCTGGGCGTCCCAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTT 756704 Query 70037 CAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATAT-CCCACTGATGAATTCCTATC 70095 ||| | |||| || || || | ||| ||| | || |||| || || || || || Sbjct 756703 GAGACATAAGATGATACGTCTCTAGCGCTTTTTCCAGATCCCCAATG-TGGATGCCAATG 756645 Query 70096 GCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGG 70155 | || | ||||| || ||| || |||| ||| | | || ||||||| | ||| Sbjct 756644 GATACTCTCATCAGCAGATGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGG 756585 Query 70156 TATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATA 70215 || || |||||| ||| || |||||||| || | ||| ||| || || ||| | Sbjct 756584 TAGGACCTTTCCAAAGTCTTGAACCCAAAGTAATCGTAATTAAAATCCCTCGTGTAGTCA 756525 Query 70216 ATAACAGAATTTAGTTTATCCTTATATT 70243 || | |||||| ||||||||| || Sbjct 756524 ATTTCCTTGTTTAGTCTATCCTTATGTT 756497 >seq13 Length=1997354 Score = 161 bits (178), Expect = 1e-34 Identities = 358/529 (68%), Gaps = 10/529 (2%) Strand=Plus/Minus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT-TAGACC 39690 || || || ||||||| |||||||| |||||| || ||||||||| ||| | | | Sbjct 1648196 TGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTTC 1648137 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGC 39750 |||| || | |||||| || ||| ||| |||| ||| | ||| || || || Sbjct 1648136 T-GCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACACA 1648078 Query 39751 TGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG-TATCATTATGTATCCACTTCTGTGC 39807 ||| || || | || ||| | | | ||| |||| || ||||||||| ||| Sbjct 1648077 GGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTT---TATCCACTTGGCTGC 1648021 Query 39808 CCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA-ATGTT 39866 ||| ||||| ||||| || || || |||| || || | ||| || | || | Sbjct 1648020 CCACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCT 1647961 Query 39867 TTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGT 39926 || | || | ||||| || | |||||||||| |||||| | ||||| ||||| | Sbjct 1647960 TTCCTTCTCGTCCTTTATG-TAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATAT 1647902 Query 39927 TTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAAC 39986 |||||| || ||||| || |||||| |||| || |||||||| || | Sbjct 1647901 TTTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTA 1647842 Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||||| | || |||||||| ||| ||||||||||| || || || || ||||| | Sbjct 1647841 AAAATTTGCTTGCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACA 1647782 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 ||||||| || |||| |||||||| | ||||| | | || || | ||| | | Sbjct 1647781 CATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAG 1647722 Query 40107 ATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 | | || | ||||||||||||||| || ||||| || || |||||||| Sbjct 1647721 ACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTA 1647673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908679790960