Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 129 7e-25 seq12 95.1 2e-14 >seq4 Length=1862670 Score = 129 bits (142), Expect = 7e-25 Identities = 964/1539 (63%), Gaps = 44/1539 (3%) Strand=Plus/Minus Query 110471 TGGTCAATGAAG-CGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTC 110529 ||||| |||||| |||| | || | |||||||||||||||| | |||| ||| || || Sbjct 758237 TGGTCGATGAAGGCGCCTCGGTCG-GCCGCCATATCAATGATGTTCTTCTGCTTGATCTC 758179 Query 110530 CCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGA 110589 |||||| || |||||| | ||| | || | || || || |||| |||| Sbjct 758178 CCAAACGGTTTTATAGAGCTCCTTCAAGTCGTTAGGAATTTCGCTAATATATTGGAC--- 758122 Query 110590 ACCCCCCGCCTTCACCATGAGATCCT---TCATATCCTTGGACCAGAGACCAATCTTCTT 110646 || || | | ||||| | || |||| |||| |||||||||| | Sbjct 758121 ACTTCCGTTGTGGGCAATGAGCTGCTGCTTCATGTCCTCATCCCAGAGACCACGATCGAA 758062 Query 110647 GAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAG 110706 |||||| || | ||||| ||| || | || ||||| || || || || Sbjct 758061 GAGGTCCTTCAACAGGTGTGGGTTCACTACGAAGAACTCTCCACTCAGAACCCTCCTGTA 758002 Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | ||||| |||||||| | || || || || | ||||||| || || Sbjct 758001 GTAAATGTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGA 757942 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||||| || || || | | || | || ||| || | Sbjct 757941 AGCAGTAGGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGC 757882 Query 110827 CTTGAGAACATCCCAGTCG---TAGTTGAGCTTGGTTTCACCTTC-----CCACATGTCA 110878 ||| | |||||| || || ||| ||| | |||||| ||||||||| Sbjct 757881 CTTCAATTTATCCCAATCCCAATATTTG---TTG--TCCACCTTGACATTCCACATGTCG 757827 Query 110879 AACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCT 110938 |||||||| | |||||| || ||| ||||| |||| ||||| | || | || Sbjct 757826 AACTGAAGAATTCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACT 757767 Query 110939 TCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 | |||||||| | | ||||| | || | |||||| ||||| || || | | Sbjct 757766 TGTGCCAATTCCATGGACATCTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTA 757707 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || | ||||| || ||| || ||| ||| ||| | | || || || || Sbjct 757706 TTTAATTCCTTCGCAGAATCGGATTCATATGGGTATCTAAGAAGCATGAAGGTGTCTGCC 757647 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 | ||||| || || | || || |||||||||| | | || || ||| ||| ||| Sbjct 757646 AAGCCTTGTACTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGA---TCGTTCAGCCTCC 757590 Query 111119 ---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175 || || || |||| || || || | | ||| | || |||| ||| || || Sbjct 757589 TGCACAGGGTAGTAATTCCTCTCTATAATTTGGTCCAAGTTACGTGTAATAATTTTGGTA 757530 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AG 111234 ||||| | ||||| | | ||| || | | || | | |||| | |||| | | Sbjct 757529 ATTTCGTACAGTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAA-TTTGCACAA 757471 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 ||||| || |||||||| || || ||| || || || ||||| | ||| || Sbjct 757470 CGCGATGGAGGCCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATCTC 757411 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 ||| | ||| || || ||||||||||| ||||||||||| |||| ||| || Sbjct 757410 ACAACAGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACA 757351 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 | ||| || || | ||||||||| ||||| || |||| || | ||| || Sbjct 757350 AGAATCTTTATACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAA 757291 Query 111415 CCAAACATC-GGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGT 111473 ||| | ||| ||| | || ||| | ||| || || || |||| || ||| || Sbjct 757290 CCATAGATCTTGCGCCAGG-ACAGTTTTTTTGCCCATACCTTCTTCCTCATATTTTAAGT 757232 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533 | || ||| || ||||||||| | || | ||||| | | || || | Sbjct 757231 ATAGCTTTTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACA 757172 Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 | || ||| | | ||| | || | ||||||||||||||| || | ||| | | Sbjct 757171 TCAAAGTCCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAG 757112 Query 111594 ATGAAAAGAGATCTCTA-CACCGAG--CCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650 | || || |||||| | | || |||||| || || || || || | || | Sbjct 757111 CATAGAAAAGGTCTCTAGCTCTTAGTTCCTCTT--TC-CCGTGATTTTTACGAAGGTCTA 757055 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC--- 111707 | || || | ||||| | ||||||||| || | || ||||| | |||||||||| Sbjct 757054 GAAATTCGAAAATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCT 756995 Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 | ||| |||| | |||||| | ||||| | || || || | |||||||| | | Sbjct 756994 TTCCGCCACCTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTA 756935 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATG 111825 || | ||| || || || || | || || ||| ||| | |||| | ||| || Sbjct 756934 ACCCGTTGGATATTCCGTTGGTTCCTCTAATGTAGGAGTTTTGT--CCTCTAATATCCTG 756877 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 | | ||||| || |||||| || || | || |||| | || || | Sbjct 756876 TACCGCTACTCCAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTC 756817 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 | ||||| | || || || | || | || |||||| || ||||| ||||| Sbjct 756816 GAAAATACCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGG 756757 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 111984 ||| || || |||| |||||| | || ||||||||||| Sbjct 756756 TCTGGGCGTCCCAGAATTGAACAACGTAGGTGTTGCGTG 756718 >seq12 Length=4930710 Score = 95.1 bits (104), Expect = 2e-14 Identities = 195/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || |||||||| |||||||||||||| |||||||| || || ||| || Sbjct 3560518 CCAACTGCATCAATTTCATCAATGAAGACGATACATGGCGCATGTTTTTTGGCTGCTTGG 3560459 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 ||||| || | | |||| ||||||| ||||| || ||||| ||| |||| | | | | Sbjct 3560458 AAGAGCTCTCTTATCCTTCTGGCACCAACACCTACGAACATTTCCTCAAATTCGGAGCCT 3560399 Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 || || ||||| || ||||| | ||| ||||| || |||| || | | || ||| Sbjct 3560398 GATGCTTGTATGAAAGGAACATTCGCTTCCCCCGCTATCGCTCTAGCAATTAACGTTTTT 3560339 Query 11804 CCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAA 11863 || ||||| || | ||| | || || || || | ||||||||| || | Sbjct 3560338 CCTGTACCCGGTTCACCGGACAGGAGTATCCCCTTCGGTAACTTGGCACCTATTTTTGTA 3560279 Query 11864 TATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTT 11913 || | || | | ||| | | |||| | || ||||||||||| | ||| Sbjct 3560278 AATTTATCAGAATTCTTTAAATAATCAATTATTTCTTCAAGTTCTTGTTT 3560229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031890094400