Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4 131 1e-25 seq11 100 2e-16 >seq4 Length=1862670 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || || ||| |||| ||| | || ||||| | ||| Sbjct 692513 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 692572 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || |||||||| |||||||| || || ||||| || ||| Sbjct 692573 GACACGATTGAAAATGTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 692632 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||||||||||||||| | ||| | || || |||||| Sbjct 692633 CAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAAC 692692 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || ||||| || || | ||| | | ||||| || Sbjct 692693 ATCCAAAAGGAATCTACATTACACTTAGTACTACGTCTCAGAGGTGGTAT 692742 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | || ||| | || ||||| | ||| Sbjct 692969 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 693028 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || ||| |||||||| |||||||| || || ||||| || ||| Sbjct 693029 GACACGATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 693088 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||||||||||||||| | ||| | || || || ||| Sbjct 693089 CAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAAC 693148 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || |||||||| || || | ||| || | ||||| Sbjct 693149 ATCCAAAAGGAATCCACCTTACACTTAGTACTACGTCTGAGAGGTGG 693195 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || ||| |||| ||| | || ||||| | || Sbjct 692741 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 692800 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||| |||||||| || || || || ||||| Sbjct 692801 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 692860 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || ||||||||||| || || | ||| | || || |||||| Sbjct 692861 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 692920 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || ||||| ||||| || ||||| || ||||| || Sbjct 692921 ATCCAAAAGGAATCCACGTTACACTTGGTCTTACGTTTACGAGGTGGTAT 692970 >seq11 Length=2627280 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| |||||||| | ||||| || | || || || || ||||| | ||| Sbjct 280245 ATGCAGATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCATCC 280304 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| || || || ||||||| | || || ||||| || ||||| || || Sbjct 280305 GAAACGATTAGGAATGTTAAGTCAAAAATTGAGGATAAGGAAGGAATCCCACCTGACCAG 280364 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGATTAC 27164 ||| | ||||||| | || || || ||||| || ||| | || | || ||| Sbjct 280365 CAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAG---GTTTGTGGCTGACTAC 280421 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| || |||||||| ||||| || ||||| Sbjct 280422 AACATCCAGAAGGAGTCCACCTTGCACTTGGT 280453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918323889280