Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 141 2e-28 >seq4 Length=1862670 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||| | ||||| || |||||||||||||| || | | ||| |||||||| Sbjct 693181 TAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATC 693122 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| || ||||| || || ||||| | ||||||||||| || | ||| || ||||| Sbjct 693121 TTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTC 693062 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| || || ||| || ||||| || ||||| || || || || | |||||| || Sbjct 693061 CTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGT 693002 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || ||||| || || | ||||| Sbjct 693001 CTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 692969 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||| | || || || ||||||||||| || || | | ||| |||||||| Sbjct 692725 TAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATC 692666 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| || ||||| || || || || | ||||||||||| || | ||| || ||||| Sbjct 692665 TTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTC 692606 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| || || ||||| ||||| || ||||| || || || || | |||||| || Sbjct 692605 CTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATAGT 692546 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| |||||||| || || | ||||| Sbjct 692545 CTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 692513 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 || ||| | ||| | ||||| || ||||||||||| || || | | ||| |||||||| Sbjct 692953 TAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATC 692894 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || | || ||||| || || || || | ||| || ||||| || | ||| || ||||| Sbjct 692893 CTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTGTC 692834 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| || || ||||| ||||| || |||||||| || || || | |||||| || Sbjct 692833 CTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATAGT 692774 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || || || || || | ||||| Sbjct 692773 CTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 692741 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || ||||||||||| || || | | ||| |||||||| || | |||||||| Sbjct 692481 GTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGCTTGCCA 692422 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || ||||| | ||||||||||| || | ||| || |||||||| || || ||| Sbjct 692421 GCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTAGCCTTC 692362 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 || ||||| || ||||| || || || || | |||||| || ||||| Sbjct 692361 ACATTTTCAATTGTGTCGGATGACTCCACGTCCAAAGTGATGGTTTTTCC 692312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151792077110