Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq13 118 9e-22 >seq13 Length=1997354 Score = 118 bits (130), Expect = 9e-22 Identities = 365/561 (65%), Gaps = 9/561 (2%) Strand=Plus/Minus Query 4563 TGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA--TTAAAC 4620 |||| |||||| |||| ||||| || |||||| || || | ||| ||| || Sbjct 1648196 TGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGT-- 1648139 Query 4621 CTCT-CTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 ||| ||| |||| |||||| ||||| || ||| ||| | || || || || Sbjct 1648138 -TCTGCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACA 1648080 Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAAT 4739 |||| ||||||| | | || ||| ||| | || || ||||| || | Sbjct 1648079 CAGGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGG---TATCGTTTATCCACTTGGCT 1648023 Query 4740 GCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTT 4799 ||||| ||||| ||||| || ||||| | | || |||| ||| | || || Sbjct 1648022 GCCCACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATT 1647963 Query 4800 TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 |||| ||| | || || ||||||||| | ||||||| | || || || ||| Sbjct 1647962 CTTTCCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATA 1647903 Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 ||||| | ||||||||| || |||||| | || || || | ||| |||| | Sbjct 1647902 TTTTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCCTCCGTAATTTGCACTTGGCGT 1647843 Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 ||||| | | |||| ||||| || || || ||||| ||||| || || ||||| Sbjct 1647842 AAAAATTTGCTTGCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAAC 1647783 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039 ||||| ||| || | | ||| | || | ||||| | | |||||| || Sbjct 1647782 ACATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTA 1647723 Query 5040 GTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAA 5099 | || |||| ||||||| | ||||| || |||||||||||||||||||| | | ||| Sbjct 1647722 GACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCAC 1647663 Query 5100 ATATCAGGATACTGAATCGGA 5120 | || |||||| ||| ||| Sbjct 1647662 ACGTCTGGATACAAAATGGGA 1647642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049527134662