Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 248 1e-60 seq13 116 5e-21 >seq4 Length=1862670 Score = 248 bits (274), Expect = 1e-60 Identities = 966/1489 (65%), Gaps = 51/1489 (3%) Strand=Plus/Minus Query 77156 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGA 77215 |||||| ||||| || || ||||| | ||| || ||||| || | |||||| | || || Sbjct 758001 GTAAATGTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGA 757942 Query 77216 AGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATC 77275 |||||| ||||||||||||| || | |||||| | || || | | || || | Sbjct 757941 AGCAGTAGGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGC 757882 Query 77276 TTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACA-----ACATCCCAAAGATCGTAT 77330 || | | | |||||||||| || || | | || |||| ||| | ||| | Sbjct 757881 CTTCAATTTATCCCAATCCCAAT-ATTTGTTG-TCCACCTTGACATTCCACATGTCGAAC 757824 Query 77331 TGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCA 77390 || |||||||| | ||||| || | || || ||||||||||| | || Sbjct 757823 TGAAGAATTCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACTTGT 757764 Query 77391 GCTAGTTCACA---AC-TCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTT 77446 || | ||| || || || ||||| || | ||||| |||||||||||||| | || Sbjct 757763 GCCAATTC-CATGGACATC---TCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTT 757708 Query 77447 ATTGAGATCTTGTGCTTCAATACTAT-CAAACGGATAATGTAA-AAGAATAAAGGCATCT 77504 ||| | || | || ||| || || | || || | ||| ||| || |||| ||| Sbjct 757707 ATTTAATTCCTTCGCAG-AATCGGATTCATATGGGTA-TCTAAGAAGCATGAAGGTGTCT 757650 Query 77505 GCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCT 77564 || || || || ||||| || || || ||||| |||||||| ||||| || ||| || Sbjct 757649 GCCAAGCCTTGTACTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCTCC 757590 Query 77565 GGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTC---TAACAACTACTTTA 77621 | | ||| || ||||| | |||||||||| | | || | ||| || | || Sbjct 757589 TGCACAGGGTAGTAATTCCTCTCTATAATTTGGTCCAAGTTACGTGTAATAATTTTGGTA 757530 Query 77622 ACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTATAAC------AAACATGTTC 77675 | ||| | ||||| ||||| ||| ||| | | || ||| || | Sbjct 757529 ATTTCGTAC---AGTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAATTTGCAC 757473 Query 77676 AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATC 77735 || || || || || | |||||| || || || || | | | | ||| | || ||| Sbjct 757472 AACGCGATGGAGGCCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATC 757413 Query 77736 TCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTG 77795 || ||| || ||||||||||| || || |||| || | ||||||| ||| || Sbjct 757412 TCACAACAGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTA 757353 Query 77796 CATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGAT 77855 || || || ||||| | || | ||| || ||||| ||||| || | ||| | Sbjct 757352 CAAGAATCTTTATACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCA 757293 Query 77856 TTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCT-CTT--TCATATTGA 77912 ||| | || ||| || | | || ||| | | | | || ||| ||||||| Sbjct 757292 AACCATA-GA-TCTTGCGCC-AGGACAGTTTTTTTGCCCATACCTTCTTCCTCATATTTT 757236 Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 |||||| ||| ||||| || |||||| ||| || || || |||||||| ||| Sbjct 757235 AAGTATAGCTTTTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGG 757176 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 |||||||| | ||| | || ||| || |||| ||||| || || ||||| | |||| Sbjct 757175 CACATCAAAGTCCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCAT 757116 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT-ATTCTTTTTAAGATC 78091 | |||| || || |||| | ||| |||| || ||||| || ||| || ||| || Sbjct 757115 ACAGCATAGAAAAGGTCTCTAGCTCTTAGTTCCTC-TTTCCCGTGATTTTTACGAAGGTC 757057 Query 78092 GAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151 ||||| || | |||||| || ||||||||||| | || | ||| | ||| || Sbjct 757056 TAGAAATTCGAAAATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCT 756997 Query 78152 TTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAAT 78211 || || || || |||| |||||| || || | ||| | || |||| |||||| | Sbjct 756996 CTTTCCGCCACCTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCAC 756937 Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATA--ACTTCCACTTG--CGCGAATAT 78267 | ||||| ||| |||| || ||||| ||| || | || ||| | | ||||| Sbjct 756936 TAACCCGTTGGATATTCCGTTGGTTCCTCTAATGTAGGAGTT----TTGTCCTCTAATAT 756881 Query 78268 TACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATG 78327 | | || || ||||| || ||| | || || || ||||| |||||| | Sbjct 756880 CCTGTACCGCTACTCCAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCG 756821 Query 78328 TATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTT 78387 | ||| | ||||| || || ||| | |||| ||||| |||||| ||||||| Sbjct 756820 TCTCGAAAATACCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTT 756761 Query 78388 GATG-ATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCA 78446 | | || | || || | ||| || || || || | ||| || ||||| |||||| | Sbjct 756760 GCGGTCTGGGC-GTCCCAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGA 756702 Query 78447 GAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGT-CCCATTGATGAATTCCTACCGC 78505 || | |||| || || || | ||| ||| | | |||| || || || || | | Sbjct 756701 GACATAAGATGATACGTCTCTAGCGCTTTTTCCAGATCCCCAATG-TGGATGCCAATGGA 756643 Query 78506 TACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTA 78565 ||| | ||||| || ||| || |||||||| | |||| ||||||| | | ||| Sbjct 756642 TACTCTCATCAGCAGATGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTA 756583 Query 78566 TGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTC 78614 || |||||||||| || || ||||| || | ||| ||| || ||| Sbjct 756582 GGACCTTTCCAAAGTCTTGAACCCAAAGTAATCGTAATTAAAATCCCTC 756534 >seq13 Length=1997354 Score = 116 bits (128), Expect = 5e-21 Identities = 355/540 (66%), Gaps = 14/540 (3%) Strand=Plus/Minus Query 48156 TGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT-TAGTCC 48214 || ||||||||||||| |||||||| |||||| || ||||| || ||| | || | Sbjct 1648196 TGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTTC 1648137 Query 48215 ACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGC 48274 | || || | |||||| || || |||| |||| ||| | || || || || Sbjct 1648136 T-GCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACACA 1648078 Query 48275 CGCAAATGCGGTAAGTCTCTCTCC---GTAACTGGCTTCGTTGTGTATCCACCGTTG--T 48329 ||| || | || ||| | | | ||| ||||| ||||||| ||| | Sbjct 1648077 GGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTT---TATCCAC--TTGGCT 1648023 Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 ||||| || || ||||| || || || |||| || || | ||| || || Sbjct 1648022 GCCCACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATT 1647963 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 |||| || || || | ||| | |||||||| | |||||| | || ||||| ||| Sbjct 1647962 CTTTCCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATA 1647903 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC-CGT 48508 ||||||| || ||||| || |||||| | || || || || || || | ||| Sbjct 1647902 TTTTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCCTCCGTAATTTGCACTTGGCGT 1647843 Query 48509 ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568 | ||| | | | || ||||| || || ||||||||||| || || || || || || Sbjct 1647842 AAAAATTTGCTT-GCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAA 1647784 Query 48569 TACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTT 48628 |||||||| || |||| |||||| || | | | ||| | | || || | ||| | Sbjct 1647783 CACATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCT 1647724 Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 || | || | ||||||||||||||| || || || || |||||||| || | || ||| Sbjct 1647723 AGACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCA 1647664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668678432960