Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 233 3e-56 seq13 136 6e-27 >seq4 Length=1862670 Score = 233 bits (258), Expect = 3e-56 Identities = 978/1520 (64%), Gaps = 39/1520 (3%) Strand=Plus/Minus Query 75751 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGA 75810 |||||| ||||| || || ||||| | ||| || ||||| || | |||||| | || || Sbjct 758001 GTAAATGTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGA 757942 Query 75811 AGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATC 75870 |||||| ||||||||||||| || | |||||| | || || | | || || | Sbjct 757941 AGCAGTAGGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGC 757882 Query 75871 TTTTAGATATTTCCAATCCCAAAGATCTGATGGTACA-----ACATCCCAGAGATCGTAT 75925 || | | | |||||||||| || || || | || |||| ||| | ||| | Sbjct 757881 CTTCAATTTATCCCAATCCCAAT-ATTTGTTG-TCCACCTTGACATTCCACATGTCGAAC 757824 Query 75926 TGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCA 75985 || |||||||| | |||||| || | || || || |||| |||| | || Sbjct 757823 TGAAGAATTCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACTTGT 757764 Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTA 76045 || | ||| | ||| || ||| | ||||| |||||||||||||| | ||||| Sbjct 757763 GCCAATTCCATGGACATCTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTATTT 757704 Query 76046 AGATCTTGCGCTTCAAGACTA----TCAAAAGGATAATGTAA-AAGAATAAATGCATCTG 76100 | || | ||| ||| | ||| | || || | ||| ||| || || | |||| Sbjct 757703 AATTCCTTCGC----AGAATCGGATTCATATGGGTA-TCTAAGAAGCATGAAGGTGTCTG 757649 Query 76101 CTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTG 76160 | | || || ||||| || || || ||||| |||||||| ||||| |||||| || Sbjct 757648 CCAAGCCTTGTACTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCTCCT 757589 Query 76161 GAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCA 76220 | | |||||| ||||| | |||||||||| | | || | || | ||| | Sbjct 757588 GCACAGGGTAGTAATTCCTCTCTATAATTTGGTCCAAGTTACGTGTAATAATTTTGGTAA 757529 Query 76221 CGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATCACAA--ACATATTAAGA----G 76274 || | ||||| ||||| |||| ||| | | ||| ||| ||| | | Sbjct 757528 TTTCGTACAGTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAATTTGCACAACG 757469 Query 76275 CTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCG 76334 | || || || | |||||| ||||| || || | | | ||| | || ||||| Sbjct 757468 CGATGGAGGCCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATCTCAC 757409 Query 76335 TGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG 76394 || || |||||||| || || || || | || | ||||||| ||| |||||| | Sbjct 757408 AACAGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACAAG 757349 Query 76395 AGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCC 76454 | || ||||| | | | ||| || ||||| ||||| || | ||| | || Sbjct 757348 AATCTTTATACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAACC 757289 Query 76455 AGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCT-CTT--TCATATTGTGTAT 76511 | | || ||| || | | || ||| | | | | || ||| ||||||| | | Sbjct 757288 ATA-GA-TCTTGCGCC-AGGACAGTTTTTTTGCCCATACCTTCTTCCTCATATTTTAAGT 757232 Query 76512 ATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACA 76571 ||| | ||| ||||| || |||||| ||| || || |||||||||||||| |||| Sbjct 757231 ATAGCTTTTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACA 757172 Query 76572 TCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAG 76631 |||| | ||| | || ||| || || | ||||| || || ||||| | ||||| || Sbjct 757171 TCAAAGTCCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAG 757112 Query 76632 CAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT-ATTCTTTTTAAGATCTAGG 76690 || || || |||| | ||| |||| || ||||| || ||| || ||| ||||| Sbjct 757111 CATAGAAAAGGTCTCTAGCTCTTAGTTCCTC-TTTCCCGTGATTTTTACGAAGGTCTAGA 757053 Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTA 76750 || || | |||||| || ||||||||||| | || | || | ||| || || Sbjct 757052 AATTCGAAAATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCTTT 756993 Query 76751 TTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATG 76810 || || || |||| |||||| || || | ||| | || |||| |||||| | | Sbjct 756992 CCGCCACCTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTAAC 756933 Query 76811 CCGTTAGATGTACCATTTGTTCCAGAAATATA--ACTTCCACATGCACGAATATTACTAA 76868 ||||| ||| | || || ||||| ||| || | || | | | ||||| | Sbjct 756932 CCGTTGGATATTCCGTTGGTTCCTCTAATGTAGGAGTT--TTGTCCTCTAATATCCTGTA 756875 Query 76869 TAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCAT 76928 | || || ||||| || ||| |||| || || || || |||||| || || Sbjct 756874 CCGCTACTCCAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGA 756815 Query 76929 AGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG-A 76987 | || || || || |||| | |||| ||||| |||||| |||||||| | Sbjct 756814 AAATACCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGGTC 756755 Query 76988 TGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGT 77047 || | || || | ||| ||||| ||||| | ||| || || || |||||| ||| | Sbjct 756754 TGGGC-GTCCCAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGACATA 756696 Query 77048 AGATTGTATGTTTCAATAACTGCTTCTATAT-CCCATTGATGAATTCCTACAGCGACACG 77106 |||| || || || | || ||| | || |||| || || || || | | || | Sbjct 756695 AGATGATACGTCTCTAGCGCTTTTTCCAGATCCCCAATG-TGGATGCCAATGGATACTCT 756637 Query 77107 CATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTT 77166 ||||| || ||| || |||| ||| | | |||| ||||||| | | ||| || | Sbjct 756636 CATCAGCAGATGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGACCT 756577 Query 77167 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGA 77226 ||||||||| || || ||||| || | ||| ||| || || ||| ||| || Sbjct 756576 TTCCAAAGTCTTGAACCCAAAGTAATCGTAATTAAAATCCCTCGTGTAGTCAATTTCCTT 756517 Query 77227 ATTTAGTTTGTCCTTATATT 77246 |||||| | ||||||| || Sbjct 756516 GTTTAGTCTATCCTTATGTT 756497 >seq13 Length=1997354 Score = 136 bits (150), Expect = 6e-27 Identities = 357/538 (66%), Gaps = 10/538 (2%) Strand=Plus/Minus Query 46645 TGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT-TAGTCC 46703 || || |||||||||| |||||||| |||||| || ||||| ||| ||| | || | Sbjct 1648196 TGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTTC 1648137 Query 46704 ACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGC 46763 |||| || | |||||| ||||| |||| |||| ||| | || || || ||| Sbjct 1648136 T-GCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACACA 1648078 Query 46764 CGCGAATGCGACAAGTCTCTCTCC---GTAACTGGCATCATTATGAATCCACCTTTGAGC 46820 || || || | || ||| | | | ||| ||| || |||||| | || Sbjct 1648077 GGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTTT---ATCCACTTGGCTGC 1648021 Query 46821 CCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 46880 ||| || || ||||| || || || |||| || || | ||| || || | Sbjct 1648020 CCACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCT 1647961 Query 46881 ttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTT 46940 ||| | || || | || | |||||||| | |||||| | ||||| || || || Sbjct 1647960 TTCCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATT 1647901 Query 46941 TTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT-GTAC 46999 ||||| ||| ||||| || |||||| |||| || ||||| || || | ||| Sbjct 1647900 TTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAA 1647841 Query 47000 AAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATA 47059 ||| | | | | ||||| || ||| ||||||||||| || || || || ||||| | Sbjct 1647840 AAATTTGCTT-GCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACA 1647782 Query 47060 CATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTG 47119 ||||||| || |||| |||||||| | | | ||| | | || || | ||| | | Sbjct 1647781 CATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAG 1647722 Query 47120 ATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCA 47177 | | || | |||||||||||||||||| ||||| || |||||||| || | || ||| Sbjct 1647721 ACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCA 1647664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934275236480