Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 141 2e-28 seq11 93.3 1e-13 >seq4 Length=1862670 Score = 141 bits (156), Expect = 2e-28 Identities = 150/195 (77%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || ||||| || ||||| | || ||||| || ||| Sbjct 692972 CAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCCGAC 693031 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || |||||||||||||| |||||||| || ||||| || Sbjct 693032 ACGATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAACAG 693091 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||||| || || || ||||| | ||||||||||| || |||| | || |||||| | Sbjct 693092 AGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAAC-CTTGTCTGACTATAACAT 693150 Query 178103 CCAAAAAGAATCAAC 178117 |||||| ||||| || Sbjct 693151 CCAAAAGGAATCCAC 693165 Score = 134 bits (148), Expect = 3e-26 Identities = 149/196 (76%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| ||||| || ||||| || ||||| | || ||||| || ||| Sbjct 692516 CAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCCGAC 692575 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || |||||||||||||| |||||||| || ||||| || Sbjct 692576 ACGATTGAAAATGTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAACAG 692635 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| || || || || ||||| | ||||||||||| || |||| | || || ||| | Sbjct 692636 AGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAAC-CTTGTCTGACTACAACAT 692694 Query 178103 CCAAAAAGAATCAACA 178118 |||||| ||||| ||| Sbjct 692695 CCAAAAGGAATCTACA 692710 Score = 132 bits (146), Expect = 1e-25 Identities = 148/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || ||||| || ||||| | || ||||| || ||| Sbjct 692744 CAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCTGAC 692803 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || |||||||||||||| |||||||| || || |||||| Sbjct 692804 ACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAGCAA 692863 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| || || || || ||||| | || |||||||| || |||| | || || ||| | Sbjct 692864 AGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAAC-CTTGTCTGACTACAACAT 692922 Query 178103 CCAAAAAGAATCAAC 178117 |||||| ||||| || Sbjct 692923 CCAAAAGGAATCCAC 692937 Score = 107 bits (118), Expect = 5e-18 Identities = 129/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||||||||| ||||| | || ||||| || ||||| || || || || || | Sbjct 692310 CAGGAAAAACCATCACTTTGGACGTGGAGTCATCCGACACAATTGAAAATGTGAAGGCTA 692369 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | |||||||||||||| |||||||| || ||||| || ||||||| || || || || | Sbjct 692370 AAATTCAGGACAAAGAGGGAATCCCACCTGACCAACAGAGACTTATTTTTGCTGGCAAGC 692429 Query 178066 AGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAAC 178117 | | || |||||||| || |||| | || || ||| ||||||| ||||| || Sbjct 692430 AATTAGAGGATGGAAGAAC-CTTGTCTGACTACAACATCCAAAAGGAATCCAC 692481 >seq11 Length=2627280 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| ||||| | || |||||||| |||||||| || ||||| Sbjct 280242 AAAATGC---AGATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAG 280298 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || ||| || || ||| ||| |||| || ||||||||||| || Sbjct 280299 GCATCCGAAACGATTAGGAATGTTAAGTCAAAAATTGAGGATAAGGAAGGAATCCCACCT 280358 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| | || || | | ||||| ||| | || |||| ||| | | || || Sbjct 280359 GACCAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGAC 280418 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || || || || |||| |||| Sbjct 280419 TACAACATCCAGAAGGAGTCCACCTTGCA-CTTG 280451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730984080716