Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 8e-16 >seq10 Length=481316 Score = 98.7 bits (108), Expect = 8e-16 Identities = 285/434 (66%), Gaps = 5/434 (1%) Strand=Plus/Minus Query 18792 GACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGT 18851 ||| | || |||||||| || |||||||||||||| ||||| || ||||| | | || Sbjct 82439 GACTTGGGACCCATTTATGGTTTCCAGTGGAGACACTTTGGTGCTGAATACACAAACATG 82380 Query 18852 CAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAA 18911 || ||||| | |||| | || || | ||| |||||| || ||| ||| Sbjct 82379 CATGACAACTACGAGGATAAAGGTGTAGACCAATTAAAAAATGTTATTAATTTAATAAAA 82320 Query 18912 ACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTA 18971 | | ||| ||| | |||| || | | | |||||| ||||||| | | Sbjct 82319 AATGAACCAACAAGTAGGAGAATTATCTTGTGTGCATGGAATGTAAAGGATTTGGATCAA 82260 Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||||||| ||||||| |||||||| |||||||| | || || | || Sbjct 82259 ATGGCTTTACCTCCTTGTCACATCTTATGTCAATTTTACGTGTTTGATGGGAAACTGTCA 82200 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||| | || |||||||| | ||| |||| |||||||| || |||||||| ||| Sbjct 82199 TGCATTATGTATCAGAGATCTTGTGATTTGGGTCTTGGGGTCCCTTTCAACATCGCTTCC 82140 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGT-TACAGGACTTAAAACC-GGAGATTTAA 19149 ||| | | | || |||| | || || || | || | || | || | | | || | Sbjct 82139 TATTCCATATTCACACACATGATTGCACAGGTGTGCA--ATTTGCAGCCTGCACAGTTCA 82082 Query 19150 TTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGC 19209 | |||| |||| |||| || | ||| ||||| ||||| ||||||||||||| Sbjct 82081 TACATATTTTGGGCAATGCGCACGTCTACAACAATCACATAGACAGCTTAAAAGTGCAGC 82022 Query 19210 -TAGCTCGATCCCC 19222 || | ||||||| Sbjct 82021 TTAACAGGATCCCC 82008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399502792499160