Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq10 129 4e-25 >seq10 Length=481316 Score = 129 bits (142), Expect = 4e-25 Identities = 256/374 (68%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 101637 TAAGTGTTGGAAACGGTCTAGGAGTTCGCGTCAA-CTGCATTTTAAGAGCA-TCAATGTG 101694 |||| ||||| ||||| |||| | || || || ||||| ||| | ||| || ||||| Sbjct 81989 TAAGCGTTGGGAACGGG-TAGGGGATCCTGTTAAGCTGCACTTTTA-AGCTGTCTATGTG 82046 Query 101695 ATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGT 101754 || |||| ||| |||| || | | |||| || |||| | ||||| | ||| Sbjct 82047 ATTGTTGTAGACGTGCGCATTGCCCAAAATATGTATGAACTGTGCAGGCTGCAAATTGCA 82106 Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 || || ||||||||| || || | |||||| ||| ||||| || || || || | Sbjct 82107 CACCTGTGCAATCATGTGTGTGAATATGGAATAGGAAGCGATGTTGAAAGGGACCCCAAG 82166 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||| |||| ||||| ||||||| || || || || |||||| | || ||||| Sbjct 82167 ACCCAAATCACAAGATCTCTGATACATAATGCATGACAGTTTCCCATCAAACACGTAAAA 82226 Query 101875 TTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC 101934 ||||| ||| | |||||||| || || |||||| | | || |||||||| || Sbjct 82227 TTGACATAAGATGTGACAAGGAGGTAAAGCCATTTGATCCAAATCCTTTACATTCCATGC 82286 Query 101935 ACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAA 101994 ||||| | || || ||| ||| || | ||||||| || ||| | | |||||| Sbjct 82287 ACACAAGATAATTCTCCTACTTGTTGGTTCATTTTTTATTAAATTAATAACATTTTTTAA 82346 Query 101995 TTGGTCAACTCCTT 102008 |||||| || |||| Sbjct 82347 TTGGTCTACACCTT 82360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250108118248