Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11 179 4e-40 seq16 131 2e-25 >seq11 Length=477202 Score = 179 bits (198), Expect = 4e-40 Identities = 803/1260 (64%), Gaps = 28/1260 (2%) Strand=Plus/Minus Query 53435 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CA 53492 || |||||| | ||||| ||||||||||| || | ||||||| |||| ||| || Sbjct 52361 TCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTTATTTAATTCTTTTGCAGAGTCA 52302 Query 53493 GGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATAC 53552 | | || ||||||| | | || ||||| | ||| || || || || || || || | Sbjct 52301 GATT--CATATGGATATCTGAGTAGCATAAAGGTGTCCGCCAACCCCTGTACTCCTATCC 52244 Query 53553 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 53612 | || ||||| ||||||||||| || | |||||||| | ||| || ||||| | Sbjct 52243 CTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCCTTCACAGGGTAGTAATTTCGTT 52184 Query 53613 CTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 53672 | || |||| || | || | ||| | |||| | || | || ||| ||||| Sbjct 52183 CGATTATTTGATCTAAATTACGAGTAATAATTTTGGTAATTTCGTAAAGCTTGTTAAAAT 52124 Query 53673 CAAATTGTC------CATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAA 53726 |||| || | | ||||||| || ||| || || || |||| |||||| | Sbjct 52123 TGAATTCTCTTTTTTCCACATTTACAAATTTGCACAAGGCGATGGAAGCCAAATTACACA 52064 Query 53727 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 53786 | || || |||| || | | ||||| || |||||| || | |||||||| |||| Sbjct 52063 CAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACAACACAAGTTACTACATTTGA 52004 Query 53787 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 53846 |||| || | ||| | ||||| || ||||| | ||||||||| | ||| | | Sbjct 52003 TGGTACCCAGATTCTTCTGATTCGATTTAGCATTACAAGAATCCTTATACAACATGTAAG 51944 Query 53847 GCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTA 53906 | ||||||||| || || || || ||| || ||| | | | ||| | | Sbjct 51943 GAACACCAGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTTGTGCC---AGCA 51887 Query 53907 TAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTC 53963 | ||| | | | |||||| ||| ||| | || | | ||| || || |||| Sbjct 51886 CCGTTTTTTTCCCCATATTTTCTTCTTCATATTTTAAGTAGAGTTTTTCGAATTCTTCTC 51827 Query 53964 CCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 54023 |||| | || || |||||||||| || ||||| | | ||| | | | | Sbjct 51826 CCCATGACTCACTTAACCCTGGACATTCATTTGGGCACATGAGAGTCCAATTTTGATTTT 51767 Query 54024 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 54083 ||||||||| |||||||| | ||||| | ||| | ||| ||| ||||||| | || Sbjct 51766 CCTTCACTCTCTTCATAAACAAGTCAGGTACCCACACAGCATAAAAAAGATCTCGAGCTC 51707 Query 54084 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143 | |||| || || || ||| ||| | | ||| | || | | ||| || ||||||| Sbjct 51706 GAAGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCTGAATGCC 51647 Query 54144 ACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTT-TGTT---TCCTCCCTGATCTATG 54199 | ||||| | || | | || || || || || | || |||||| ||||| | Sbjct 51646 ATGGTTCAATATAAACTG-CAAAAGACC---CCTTTCTCTTTCCTCCTCCTTGATCCACA 51591 Query 54200 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 54259 || ||||| || | |||| | || || | |||||| | | ||||||||| ||||| Sbjct 51590 TACCTAGCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCATTGGATATTCCATTT 51531 Query 54260 GTCCCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCC 54318 || || ||||| | | | | | ||||| | || || |||||||| || Sbjct 51530 GTTCCTCTAATATATGAATTTTGT-CCTCTAATATCTTGTACTGCTACTCCTATCCCACC 51472 Query 54319 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 54378 || | || ||||| || ||| | |||| || ||| | || || || || || Sbjct 51471 AGCTGTCTTGCTAATTAACGCACATTGCTTTAGTGTTTCAAATATACCTTCAATCGAGTC 51412 Query 54379 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 54438 | ||||| || ||||||||| ||||||||| | | || || | ||| || Sbjct 51411 AGATTTCATGCAGAGGAGAAAACAGGAAGACATTTGTGGCCTGGGCGTACCAGAATTGAA 51352 Query 54439 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498 |||||||| | ||| || || || | |||| || | | || ||| ||||| | || Sbjct 51351 CAAGGTAGGTGTAGCATGTGTGAAATACTTTTGTGACATCAAATGGTATGTCTCTAATGC 51292 Query 54499 TGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 54557 || | ||| ||| || || || || | | || | ||| | || || || |||| Sbjct 51291 CTTTTCCAAATCACCAATG-TGGATCCCAATCGATACTCTCATCAGCAGATGTTGTGGTC 51233 Query 54558 TTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 54617 |||| || || || || || | ||| || |||| ||||| || || |||| Sbjct 51232 GCTCAATTATTTTTCCATTAATACGAAGGAGGTATGACCTTTCTAAAGTCTTGAATCCAA 51173 Query 54618 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATT 54677 |||||| || ||| |||||| |||| || | ||| ||| | ||||||| || Sbjct 51172 AATAGTCATAGTTAAAATCTCGTGTGTAATCGATTTCCTTGTTCAGTCTGTCCTTATGTT 51113 >seq16 Length=409614 Score = 131 bits (144), Expect = 2e-25 Identities = 200/280 (71%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 24411 TCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG 24470 ||||| || | || ||| | ||||| ||||| ||||||| || ||||| || ||| Sbjct 247792 TCAATTAATAAGCTGTACGTCTCCGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTA- 247734 Query 24471 AAACATCTA-GCCTCGGTAATCTGTACTTCTA-TACAAAATCGTTCTGCTAAATTTTCAT 24528 ||| ||| || || || || || |||| || ||| | | || ||||||||||| Sbjct 247733 AAATTTCTTTGCTTCCGTTATTTGCACTTGGCGTAAAAATTTGCTC-GCTAAATTTTCCA 247675 Query 24529 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 24588 || ||||| ||||||||||||||||| ||||| |||||||| ||||||| |||||| | Sbjct 247674 ATACAATTCCATCACTGGCTGCAAAAAAAGCCAACACATGTTTAATAAAATGTTTTTCAT 247615 Query 24589 CTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 24648 | ||| ||| | |||| || | ||| |||| | || | ||| || |||||| Sbjct 247614 TTTCATTTAATTTTTCGAAATCTTTTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCC 247555 Query 24649 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 24688 | || || || || || |||||||| | || ||| | ||| Sbjct 247554 AGAAGGACGCTTCCGCTTTTTTATAAAAATCCCACACGTC 247515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719759463040