Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 5e-15 seq45 87.8 3e-12 >seq10 Length=481316 Score = 96.9 bits (106), Expect = 5e-15 Identities = 352/540 (65%), Gaps = 17/540 (3%) Strand=Plus/Plus Query 205450 TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 ||||||||||| | || |||| ||| ||| | || || || || || | |||| Sbjct 82111 TGTGCAATCATGTGTGTGAATATGGAATAGGAAGCGATGTTGAAAGGGACCCCAAGACCC 82170 Query 205510 ATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAAT 205569 | |||| ||||| |||||||| |||| || ||| || || || | |||| Sbjct 82171 AAATCACAAGATCTCTGATACATAATGCATGACAG---TTTCCCATCAAACACGTAAAAT 82227 Query 205570 TGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGC 205628 || ||| || | |||||||| |||| | |||| | || | ||| | |||||| || Sbjct 82228 TG-ACATAAGATGTGACAAGGAGGTAAAGCCATTTGATCCAAATCCTTTACATTCCATGC 82286 Query 205629 TGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAA 205688 || || || | ||| | |||| |||||||||| ||| |||| || | |||| Sbjct 82287 ACACAAGATAATTCTCCTACTTGTTGGTTCATTTTTTATTAAATTAATAACATTTTTTAA 82346 Query 205689 TTGATCAAATCCTTGAT--TTGTATAATTTGT-ATCCATATCAATATATTTAGCACCAAA 205745 ||| || | |||| || | || | |||| || ||| | | |||| ||||||||| Sbjct 82347 TTGGTCTACACCTTTATCCTCGT---AGTTGTCATGCATGTTTGTGTATTCAGCACCAAA 82403 Query 205746 ATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACC 205805 || | ||| || |||||||||| || || || ||| ||| ||||| | | || Sbjct 82404 GTGTCTCCACTGGAAACCATAAATGGGTCCCAAGTCATTCACTTCTCTATGA-AATAATT 82462 Query 205806 ACGtttttttatatattttaat-gatccattttcatcccaaatatggattcctttatttt 205864 | | || | | | | | | ||||||| | |||| |||| | | ||| | || Sbjct 82463 TCCTGTTGTCAAGGAACTCCCTCGTTCCATTTGCTTCCC--ATATCCTTACGTTTTTGTT 82520 Query 205865 ttaGAA--TATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCC 205922 | | || | ||| || ||| ||| || ||||| | |||||||||| |||||| Sbjct 82521 TAACAAGGTGTTTCCGTTTGTTTCTCCTCGAATGAACCAAAGCAATTCTTCAATAATTCC 82580 Query 205923 TCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTTATATTTCAT 205982 ||| |||| | | || ||||| |||| || || | | || ||| ||| ||||||| Sbjct 82581 CCTCAAAAATAATTTCTTGGTTGTTAATAGGGGGAAATACTGATTTAAATTAAATTTCAT 82640 >seq45 Length=210479 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| ||||| ||||||||| || ||||| || || ||||||||||| Sbjct 197959 GACACAATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATTCCACCTGATCAG 198018 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 || || ||||| ||||| ||||||||||| || ||| Sbjct 198019 CAGAGACTTATATTTGCTGGAAAACAATTGGAAGAT 198054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755453658086400