Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq16 100 3e-16 >seq16 Length=409614 Score = 100 bits (110), Expect = 3e-16 Identities = 200/294 (68%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 16514 TCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAA 16573 || |||| ||| || ||| | || || |||||||| || | |||||| || || ||| Sbjct 247792 TCAATTAATAAGCTGTACGTCTCCGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTAA 247733 Query 16574 AAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTT 16632 || | ||||| | |||||| |||| | |||||| || || ||||| ||||| Sbjct 247732 AATTTCTTTGCTTCCGTTATTTGCACTTG-GCGTAAAAATTTGCTCGCTAAATTTTCCAA 247674 Query 16633 AACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTT 16692 || |||||||| || ||||||||||| || | | ||||||||||||| |||||| || Sbjct 247673 TACAATTCCATCACTGGCTGCAAAAAAAGCCAACACATGTTTAATAAAATGTTTTTCATT 247614 Query 16693 ATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCA 16752 || | |||| | || ||||| | || || || | || || | ||||| Sbjct 247613 TTCATTTAATTTTTCGAAATCTTTTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCCA 247554 Query 16753 AAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGG 16806 || || || | || |||||||| | | ||| | |||| ||| | ||| || Sbjct 247553 GAAGGACGCTTCCGCTTTTTTATAAAAATCCCACACGTCTGGGTACAAAATGGG 247500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462510566212800