Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq10 152 4e-32 >seq10 Length=481316 Score = 152 bits (168), Expect = 4e-32 Identities = 347/514 (68%), Gaps = 10/514 (2%) Strand=Plus/Minus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 || ||| ||||||| || || |||||| || || || ||||||| || | ||| Sbjct 82616 TTCCCCCTATTAACAACCAAGAAATTATTTTTGAGGGGAATTATTGAAGAATTGCTTTGG 82557 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAG-ATTTGGAG 20162 || ||| |||| |||||| | | | ||||| || || | |||| || ||| Sbjct 82556 TTCATTCGAGGAGAAACAAACGGAAAC-ACCTTGTTAAACAAAAACGTAAGGATATGGGA 82498 Query 20163 CGCACATGGATCTAAGCAATT--TTTACA-CAGCAATGGATTTGACAACCGTCAAGAGGG 20219 ||| ||||| | | | | || || ||| ||| || |||| | | | ||| | Sbjct 82497 AGCAAATGGAACGAGGGAGTTCCTTGACAACAGGAAATTATTTCATA---GAGAAGTGAA 82441 Query 20220 GGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACAT 20279 || ||||| || | ||||| || || |||||||| ||||| |||||||| |||| Sbjct 82440 TGACTTGGGACCCATTTATGGTTTCCAGTGGAGACACTTTGGTGCTGAATACACAAACAT 82381 Query 20280 GAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAA 20339 | | || || | |||| ||||| |||||| ||||||||||||||||||| || Sbjct 82380 GCATGACAACTACGAGGATAAAGGTGTAGACCAATTAAAAAATGTTATTAATTTAATAAA 82321 Query 20340 AAC-GAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTT 20398 || ||||| | | | || |||||||| || || || ||||| | || ||| || | Sbjct 82320 AAATGAACCAACAAGT-AGGAGAATTATCTTGTGTGCATGGAATGTAAAGGATTTGGATC 82262 Query 20399 TAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGT 20458 ||||||||| ||||| ||||| || |||| ||||||||||| | || || ||| Sbjct 82261 AAATGGCTTTACCTCCTTGTCACATCTTATGTCAATTTTACGTGTTTGATGGGAAACTGT 82202 Query 20459 CGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAA 20518 | || |||||||| |||| |||| |||| || || || |||||||| || || Sbjct 82201 CATGCATTATGTATCAGAGATCTTGTGATTTGGGTCTTGGGGTCCCTTTCAACATCGCTT 82142 Query 20519 GTTATGCGCTGCTTACGTATATGATTGCACATGT 20552 ||| | | | || | ||||||||||| || Sbjct 82141 CCTATTCCATATTCACACACATGATTGCACAGGT 82108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399182793466360