Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq16 104 2e-17 >seq16 Length=409614 Score = 104 bits (114), Expect = 2e-17 Identities = 314/476 (66%), Gaps = 23/476 (5%) Strand=Plus/Minus Query 14280 GtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAG 14339 |||| || |||||||| || ||| ||| ||| ||| || || ||||| || || Sbjct 247992 GTTTCTTAAACCAAAAGATAGCACAGAAGCTTCCACTAAATAAAATGCCCTCGACACAAG 247933 Query 14340 CAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGAT-ATCCATTTTCTAGC 14397 || |||| || | |||| |||| || ||||| ||| | |||||||| || Sbjct 247932 CATTTGCTACTATCCTTTCTGCAAAGGAG-----TTTGTATCGTTGATCCATTTGGCTGC 247878 Query 14398 CCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTT 14457 ||| | ||| || || | | || |||||||||||| ||| |||| || || Sbjct 247877 CCACAACGCTTTGTTCTTCACAGCTGGAATATTTTCAATAGCATGAAACAAAT--TCATT 247820 Query 14458 CTCTT----TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 |||| | || ||| | |||| | ||||| | |||||| ||| | || ||||| | Sbjct 247819 CTCTCCTTCTCGTCCTTTA--TGTAGTTGTCAATTAATAAGCTGTACGTCTCCGAGTGAA 247762 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573 | ||||| | ||||| || || ||||| | ||||| | ||| || | | Sbjct 247761 TATTTTCAACTGCTATTTGGAAGGAGTAAAATTTCTTTGCTTCCGTTATTTGCACTTG-G 247703 Query 14574 AGTAAAATCTTTCG-GCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14632 |||||| || | || |||||||| || || |||||||| ||||||||||| ||| Sbjct 247702 CGTAAAAATTTGCTCGCTAAATTTTCCAATACAATTCCATCACTGGCTGCAAAAAAAGCC 247643 Query 14633 AATATGTTTTTAATAAAGTATTGCTC---TTCATTGCTGAGTTTTTTCCAATCGGCTAAA 14689 || | | ||||||||| | || || |||||| | ||||| |||| |||| Sbjct 247642 AACACATGTTTAATAAAATGTTTTTCATTTTCATTT---AATTTTTCGAAATCTTTTAAA 247586 Query 14690 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 || |||| | || | ||| ||| ||||||| || || | ||||||||||| Sbjct 247585 TCGCTAGACAAGTCAATTTCCTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTATA 247530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482344104728640