Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq16 96.9 3e-15 seq11 93.3 4e-14 >seq16 Length=409614 Score = 96.9 bits (106), Expect = 3e-15 Identities = 367/573 (64%), Gaps = 5/573 (1%) Strand=Plus/Plus Query 57561 TATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAA 57620 || |||||| | ||| | | || ||||| || ||||| || || ||||| | || ||| Sbjct 247509 TACCCAGACGTGTGGGATTTTTATAAAAAAGCGGAAGCGTCCTTCTGGACAGCTGAGGAA 247568 Query 57621 GTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTT 57680 | ||| |||||| ||| | | |||| || | || ||| ||| | | ||||| Sbjct 247569 ATTGACTTGTCTAGCGATTTAAAAGATTTCGAAAAATTAAATGAAAATGAAAAACATTTT 247628 Query 57681 ATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTC 57740 |||||||| |||||||| ||||| || || ||||| ||||| || ||||| | | Sbjct 247629 ATTAAACATGTGTTGGCTTTTTTTGCAGCCAGTGATGGAATTGTATTGGAAAATTTAG-C 247687 Query 57741 GA-AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 || | ||||| || |||||||| | ||||| || | |||||| || ||| | Sbjct 247688 GAGCAAATTTTTACGCCAAGTGCAAATAACGGAAGCAAAGAAATTTTACTCCTTCCAAAT 247747 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || ||||||| | || || || | ||| || | || || | ||| | ||||| Sbjct 247748 AGCAGTTGAAAATATTCACTCGGAGACGTACAGCTTATTAATTGACAACTACATAAAGGA 247807 Query 57860 CAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAA 57919 | | | |||| | | |||| | || || |||| || || || | || || Sbjct 247808 CGAGAAGGAGAGAATGAATTTGTTTCATGCTATTGAAAATATTCCAGCTGTGAAGAACAA 247867 Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 || |||| || ||||||||| || || || | | || || || ||| || | Sbjct 247868 AGCGTTGTGGGCAGCCAAATGGATCAA---CGATACAAACTCCTTTGCAGAAAGGATAGT 247924 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || || ||||| || || || ||| || ||||| || || |||||| | Sbjct 247925 AGCAAATGCTTGTGTCGAGGGCATTTTATTTAGTGGAAGCTTCTGTGCTATCTTTTGGTT 247984 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||||| | | ||| |||||||| || || || ||||| || || || || Sbjct 247985 TAAGAAACAAAACAAGTTGCATGGCCTGACTTTCAGTAATGAGTTAATTAGTCGAGATGA 248044 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 || | || || |||||| ||||| || || Sbjct 248045 AGGATTGCACACAGATTTTAATTGCCTCATTTA 248077 >seq11 Length=477202 Score = 93.3 bits (102), Expect = 4e-14 Identities = 432/680 (64%), Gaps = 15/680 (2%) Strand=Plus/Minus Query 22493 TAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAA 22552 ||||| || |||| | || || |||||||||||||| ||||| ||||| | || ||| Sbjct 52616 TAAATATTACTTGTGTATGGCTCAAAAGATTCATTGTTGCCCAGGATCTGTGACGTGGAA 52557 Query 22553 GCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTC 22612 || || ||||| || || | || || || || ||||| ||||| || |||| | Sbjct 52556 GCAGTAGGCATTGGAGCAAGCAAGAGAGAATTCCTCAATCCGTGTTTCTTTATTTGTGCC 52497 Query 22613 TTGAGCATCGACCAGTCCC---ACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669 ||||| | |||||||| || || | | ||||||| |||||| || || Sbjct 52496 TTGAGTTTATCCCAGTCCCAATACTTATTATCCACCTTCACATT---CCACATGTCAAAT 52440 Query 22670 TGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATA-TCGC 22728 || | | || | || || || || || |||||||| || || ||||| | | | Sbjct 52439 TGAAGAATTCCTTGGCTAGCTGGACTTCCAGGATACGTTTCATAAGGTCCATACACTTGT 52380 Query 22729 GGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTT 22788 | ||| ||| | | ||||| || | ||||| || || ||||| ||| | || || Sbjct 52379 GCCAA-TTCCATGGACATTTCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTTATT 52321 Query 22789 CAATTCGGCGGCGGCGACGCTTTCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCA 22847 ||||| || | | | ||| || || ||| | | | || || | |||||||| Sbjct 52320 TAATTCTTTTGCAGAGTCAGATTCATATGG-ATATCTGAGTAGCATAAAGGTGTCCGCCA 52262 Query 22848 TACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCA 22907 ||||| || ||||| || || |||| || | || ||| ||| | || || || Sbjct 52261 ACCCCTGTACTCCTATCCCTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCCTTCA 52202 Query 22908 AAGGATACCAATTCGAATCGATTGTTCTGTTC-AAGTTTCTGGTCACAATTTTCGTTATN 22966 ||| || |||| |||||| || || || || || | || | |||||| || || Sbjct 52201 CAGGGTAGTAATTTCGTTCGATTATT-TGATCTAAATTACGAGTAATAATTTTGGTAATT 52143 Query 22967 NNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA---ACAAACTTGTTGACGGCG 23023 | ||| | | | | | || ||| ||||| ||| | |||| Sbjct 52142 TCGTAAAGCTTGTTAAAATTGAATTCTCTTTTTTCCACATTTACAAATTTGCACAAGGCG 52083 Query 23024 ATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTA 23083 || || || | ||| || || ||||| || || || || || || | ||| || | Sbjct 52082 ATGGAAGCCAAATTACACACAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACAA 52023 Query 23084 CATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 || | || ||||| || || || |||| ||| |||| || ||| ||| || ||| Sbjct 52022 CACAAGTTACTACATTTGATGGTACCCAGATTCTTCTGATTCGATTTAGCATTACAAGAA 51963 Query 23144 TCCTTGTAGAGCATGTACGG 23163 ||||| || | |||||| || Sbjct 51962 TCCTTATACAACATGTAAGG 51943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765018124160