Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq16 136 5e-27 >seq16 Length=409614 Score = 136 bits (150), Expect = 5e-27 Identities = 194/268 (72%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA-GC 33928 || ||| | ||||| ||||| ||||||| || || || || ||| ||| ||| || Sbjct 247780 CTGTACGTCTCCGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTA-AAATTTCTTTGC 247722 Query 33929 CTCGGTAATCTGCACTTCT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 || || || ||||||| ||| ||| | | || ||||||||||| || ||||||| Sbjct 247721 TTCCGTTATTTGCACTTGGCGTAAAAATTTGCTC-GCTAAATTTTCCAATACAATTCCAT 247663 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 34047 |||||||||||||||| ||||| |||||||| ||||||| |||||| | | ||| || Sbjct 247662 CACTGGCTGCAAAAAAAGCCAACACATGTTTAATAAAATGTTTTTCATTTTCATTTAATT 247603 Query 34048 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 | | |||| || | ||| |||| | || | ||| || ||||||| || || || | Sbjct 247602 TTTCGAAATCTTTTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCCAGAAGGACGCTT 247543 Query 34108 CTGCCTTTTTATACATATTCCAGATGTC 34135 | || |||||||| | || ||| | ||| Sbjct 247542 CCGCTTTTTTATAAAAATCCCACACGTC 247515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815647565440