Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11 390 1e-103 >seq11 Length=477202 Score = 390 bits (432), Expect = 1e-103 Identities = 1003/1513 (66%), Gaps = 41/1513 (3%) Strand=Plus/Minus Query 37122 TAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCT 37181 |||||| || || || || || |||||| || || || || ||| ||||| || Sbjct 52665 TAGGTGGGGGTTCACTACAAAGAACTCTCCACTCAACACCCTCCTATAATAAATATTACT 52606 Query 37182 AGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCAT 37241 || ||||| |||| || ||||| || | | || || || || || ||||||||||| Sbjct 52605 TGTGTATGGCTCAAAAGATTCATTGTTGCCCAGGATCTGTGACGTGGAAGCAGTAGGCAT 52546 Query 37242 TGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATT 37301 ||| || | | || ||| |||||||| ||| | || ||| || |||| || Sbjct 52545 TGGAGCAAGCAAGAGAGAATTCCTCAATCCGTGTTTCTTTATTTGTGCCTTGAGTTTATC 52486 Query 37302 CCAATCCCATAAATCTGTTGGGTTCTTTAAC----CACATATCATATTGTAGAATACCTT 37357 ||| ||||| | | | || | || || ||||| ||| |||| ||||| |||| Sbjct 52485 CCAGTCCCAATACT-TATTATCCACCTTCACATTCCACATGTCAAATTGAAGAATTCCTT 52427 Query 37358 TACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAAC 37417 || |||||| | ||| || ||||||||||| || | || || | ||| || Sbjct 52426 GGCTAGCTGGACTTCCAGGATACGTTTCATAAGGTCCATACACTTGTGCCAATTC-CATG 52368 Query 37418 TAGATT-CTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCT 37476 | ||| | | ||| |||||||| || |||||||||||| | |||||||| |||||| Sbjct 52367 GACATTTCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTTATTTAATTCTTTTGCA 52308 Query 37477 TCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCG 37536 || || ||| ||| | | || ||||| || ||||| ||||| || || Sbjct 52307 GAGTCAGATTCATATGGATATCTGAGTAGCATAAAGGTGTCCGCCAACCCCTGTACTCCT 52248 Query 37537 ATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTG 37596 || ||||||||||| ||| ||||||| || || | ||| |||| || || ||||| Sbjct 52247 ATCCCTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCCTTCACAGGGTAGTAATTT 52188 Query 37597 ATATCTATTATTTTATTTAGATTTTTAACTAGTA----TTTTCGTAATTATTCTCAA-CT 37651 || ||||||| || || ||| || |||| |||| |||||| | | || || Sbjct 52187 CGTTCGATTATTTGATCTAAATT----ACGAGTAATAATTTTGGTAATT-TCGTAAAGCT 52133 Query 37652 TGTCGAACATAAATACGTTATT------ATTAACAAATTTACTCAACGAAATAGATCCTA 37705 ||| || | ||| | | || ||| |||||||| | ||| | || || | | Sbjct 52132 TGTTAAAATTGAATTCTCTTTTTTCCACATTTACAAATTTGCACAAGGCGATGGAAGCCA 52073 Query 37706 GATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTAC 37765 |||||| ||||| |||||||| || ||| |||||||| ||| | |||| Sbjct 52072 AATTACACACAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACAACACAAGTTAC 52013 Query 37766 TCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATA 37825 | || | || || |||| ||| | ||||| ||||| |||||||||||| ||||| | Sbjct 52012 TACATTTGATGGTACCCAGATTCTTCTGATTCGATTTAGCATTACAAGAATCCTTATACA 51953 Query 37826 GTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTG 37885 || || || || |||||||||| | | ||| | ||||||| ||||| Sbjct 51952 ACATGTAAGGAACACCAGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAA--TCTTG 51895 Query 37886 CTTTAACGATCGCTTTAAt-----ttttttCTTTGTTTCGTATTCTATATATAATTTGTT 37940 | | | || ||| | | ||||||| ||| |||| || || | ||| | Sbjct 51894 TGCCAGC-ACCGTTTTTTTCCCCATATTTTCTTC--TTCATATTTTAAGTAGAGTTTTTC 51838 Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 || || | |||||| || | ||| ||||||||||| ||| ||||| |||| ||| Sbjct 51837 GAATTCTTCTCCCCATGACTCACTTAACCCTGGACATTCATTTGGGCACATGAGAGTCCA 51778 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 | || || || | || | | |||||| || ||||||||||| | ||| ||| | Sbjct 51777 ATTTTGATTTTCCTTCACTCTCTTCATAAACAAGTCAGGTACCCACACAGCATAAAAAAG 51718 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATAT 38120 |||| | || | |||||| || || ||| |||||||| || ||| || || || Sbjct 51717 ATCTCGAGCTCGAAGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAAT 51658 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 || | ||||||||||| ||||||| | | | || ||| || | ||||| || Sbjct 51657 GTCTGAATGCCATGGTTCAATATAAACTGCAAAAGACCCCTTTCTCTTTCCTCCTCCTTG 51598 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 || | ||| ||| |||| | |||| ||| || | ||| ||||||| ||||| ||| | Sbjct 51597 ATCCACATACCTAGCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCATTGGATAT 51538 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTAT 38300 || ||| | || ||||| | | | ||| |||| || | | |||||| Sbjct 51537 TCCATTTGTTCCTCTAATATATGAATTTTGTCCTCTAATATCTTGTACTGCTACTCCTAT 51478 Query 38301 TCCACCTGCATGTTTTGATA-TTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTA 38359 ||||| || ||| ||| || |||| || ||||| |||| || |||||||||||||| | Sbjct 51477 CCCACCAGC-TGTCTTGCTAATTAACGCACATTGCTTTAGTGTTTCAAATATACCTTCAA 51419 Query 38360 TACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGG 38419 | |||| || || || | |||||| ||||||||| ||| || || || | Sbjct 51418 TCGAGTCAGATTTCATGCAGAGGAGAAAACAGGAAGACATTTGTGGCCTGGGCGTACCAG 51359 Query 38420 CGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTT 38479 || || || ||||| | |||||| |||| | |||| |||| ||| ||||| | Sbjct 51358 AATTGAACAAGGTAGGTGTAGCATGTGTGAAATACTTTTGTGACATCAAATGGTATGTCT 51299 Query 38480 CTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTT 38539 ||| | | | || | |||||| ||| || || | ||||| ||||| |||| ||||| Sbjct 51298 CTAATGCCTTTTCCAAATCACCAATGTGGATCCCAATCGATACTCTCATCAGCAGATGTT 51239 Query 38540 GTGGTCTTTCTATTATTTT---ATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTT 38596 |||||| || |||||||| |||| | | ||| || || || ||||||| || | Sbjct 51238 GTGGTCGCTCAATTATTTTTCCATTAATACG---AAGGAGGTATGACCTTTCTAAAGTCT 51182 Query 38597 TTATTCCAAAATA 38609 | | ||||||||| Sbjct 51181 TGAATCCAAAATA 51169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523347573120