Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11 194 2e-44 seq16 140 4e-28 >seq11 Length=477202 Score = 194 bits (214), Expect = 2e-44 Identities = 807/1259 (64%), Gaps = 26/1259 (2%) Strand=Plus/Minus Query 65466 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CA 65523 || |||||| | ||||| ||||||||||| || | ||||||| |||| ||| || Sbjct 52361 TCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTTATTTAATTCTTTTGCAGAGTCA 52302 Query 65524 GGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATAC 65583 | | || ||||||| | | || ||||| | ||| || || || || || || || | Sbjct 52301 GATT--CATATGGATATCTGAGTAGCATAAAGGTGTCCGCCAACCCCTGTACTCCTATCC 52244 Query 65584 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 65643 | || ||||| ||||||||||| || | |||||||| | ||| || ||||| | Sbjct 52243 CTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCCTTCACAGGGTAGTAATTTCGTT 52184 Query 65644 CTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA- 65702 | || |||| || | ||| | ||| | |||| | || | || ||| |||| Sbjct 52183 CGATTATTTGATCTAAATTACGAGTAATAATTTTGGTAATTTCGTAAAGCTTGTTAAAAT 52124 Query 65703 TCAAATCGC-----TCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAA 65757 | || || | || | ||||||| || ||| || | || |||| |||||| | Sbjct 52123 TGAATTCTCTTTTTTCCACATTTACAAATTTGCACAAGGCGATGGAAGCCAAATTACACA 52064 Query 65758 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 65817 | || || |||| || | | ||||| || |||||| || | |||||||| |||| Sbjct 52063 CAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACAACACAAGTTACTACATTTGA 52004 Query 65818 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 65877 |||| || | ||| | ||||| || ||||| | ||||||||| | ||| | | Sbjct 52003 TGGTACCCAGATTCTTCTGATTCGATTTAGCATTACAAGAATCCTTATACAACATGTAAG 51944 Query 65878 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 65937 || ||||||||| || ||| || || ||| || ||| | || | ||| | | Sbjct 51943 GAACACCAGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTTGTGCC---AGCA 51887 Query 65938 TAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTC 65994 | ||| | | | |||||| ||| ||| | || | | |||||| || |||| Sbjct 51886 CCGTTTTTTTCCCCATATTTTCTTCTTCATATTTTAAGTAGAGTTTTTCGAATTCTTCTC 51827 Query 65995 CCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 66054 |||| | || || |||||||||| || ||||| | | ||| | | | | Sbjct 51826 CCCATGACTCACTTAACCCTGGACATTCATTTGGGCACATGAGAGTCCAATTTTGATTTT 51767 Query 66055 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAA-ATCTCTGGTT 66113 ||||||||| |||||||| | ||||| | ||| | ||| ||||| || ||||| | | Sbjct 51766 CCTTCACTCTCTTCATAAACAAGTCAGGTACCCACACAGC-ATAAAAAAGATCTCGAGCT 51708 Query 66114 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGC 66173 | | |||| || || || ||| ||| | | ||| | || | | ||| || ||||| Sbjct 51707 CGAAGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCTGAATGC 51648 Query 66174 CACGGTTCCAAGTATATGGCCATA-ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 66232 || ||||| | || | || | | || || | ||| |||||| ||||| | || Sbjct 51647 CATGGTTCAATATAAACTGCAAAAGACCCCTTTCTCTTT-CCTCCTCCTTGATCCACATA 51589 Query 66233 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT 66292 ||||| || | |||| | || || | |||||| | | ||||||||| | ||||| || Sbjct 51588 CCTAGCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCATTGGATATTCCATTTGT 51529 Query 66293 CCCGGAGATATAGCTTCCACTTG--CACGAATATTACTAATTGATAGACCTATTCCCCCT 66350 || ||||| | ||| | | ||||| | || || ||||| || || Sbjct 51528 TCCTCTAATATA--TGAATTTTGTCCTCTAATATCTTGTACTGCTACTCCTATCCCACCA 51471 Query 66351 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 66410 || | || ||||| || ||| | |||| || ||| | || || || || ||| Sbjct 51470 GCTGTCTTGCTAATTAACGCACATTGCTTTAGTGTTTCAAATATACCTTCAATCGAGTCA 51411 Query 66411 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 66470 ||||| || ||||||||| ||||||||| | | || || | ||| || Sbjct 51410 GATTTCATGCAGAGGAGAAAACAGGAAGACATTTGTGGCCTGGGCGTACCAGAATTGAAC 51351 Query 66471 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 66530 |||||||| | ||| || || || | |||| || | | || ||| ||||| | || Sbjct 51350 AAGGTAGGTGTAGCATGTGTGAAATACTTTTGTGACATCAAATGGTATGTCTCTAATGCC 51291 Query 66531 GAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 66589 || | ||| ||| || || || || | | || | ||| | || || || |||| Sbjct 51290 TTTTCCAAATCACCAATG-TGGATCCCAATCGATACTCTCATCAGCAGATGTTGTGGTCG 51232 Query 66590 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 66649 |||| || || || || | | ||| || |||| ||||| || || ||||| Sbjct 51231 CTCAATTATTTTTCCATTAATACGAAGGAGGTATGACCTTTCTAAAGTCTTGAATCCAAA 51172 Query 66650 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATT 66708 ||||| || ||| |||||| |||| || || ||| ||| | ||||||| || Sbjct 51171 ATAGTCATAGTTAAAATCTCGTGTGTAATCGATTTCCTTGTTCAGTCTGTCCTTATGTT 51113 >seq16 Length=409614 Score = 140 bits (154), Expect = 4e-28 Identities = 202/280 (72%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 36434 TCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG 36493 ||||| || | || ||| | ||||| ||||| ||||||| || ||||| || ||| Sbjct 247792 TCAATTAATAAGCTGTACGTCTCCGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTA- 247734 Query 36494 AAACATCTA-GCCTCGGTAATCTGTACTTCT-GTACAAAATCGTTCTGCTAAATTTTCAT 36551 ||| ||| || || || || || |||| ||| ||| | | || ||||||||||| Sbjct 247733 AAATTTCTTTGCTTCCGTTATTTGCACTTGGCGTAAAAATTTGCTC-GCTAAATTTTCCA 247675 Query 36552 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 36611 || ||||| ||||||||||||||||| ||||| |||||||| ||||||| |||||| | Sbjct 247674 ATACAATTCCATCACTGGCTGCAAAAAAAGCCAACACATGTTTAATAAAATGTTTTTCAT 247615 Query 36612 TTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 36671 || ||| ||| | |||| || | ||| |||| | || | ||| || |||||| Sbjct 247614 TTTCATTTAATTTTTCGAAATCTTTTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCC 247555 Query 36672 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 36711 | || || || || || |||||||| | || ||| | ||| Sbjct 247554 AGAAGGACGCTTCCGCTTTTTTATAAAAATCCCACACGTC 247515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170759664320