Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11 260 2e-64 seq16 136 6e-27 >seq11 Length=477202 Score = 260 bits (288), Expect = 2e-64 Identities = 1007/1567 (64%), Gaps = 29/1567 (2%) Strand=Plus/Minus Query 79040 TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATAT 79099 |||| || || || || ||||| || |||||| ||| || |||| | ||||||| Sbjct 52669 TAAGTAGGTGGGGGTTCACTACAAAGAACTCTCCACTCAACACCCTCCTATAATAAATAT 52610 Query 79100 TACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTG 79159 |||| || ||||| || | |||||||| || |||| || || | || || || || | Sbjct 52609 TACTTGTGTATGGCTCAAAAGATTCATTGTTGCCCAGGATCTGTGACGTGGAAGCAGTAG 52550 Query 79160 GCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAG 79219 |||| || || | ||| | | ||| || | |||| | | |||| | || || Sbjct 52549 GCATTGGAGCAAGCAAGAGAGAATTCCTCAATCCGTGTTTCTTTATTTGTGCCTTGAGTT 52490 Query 79220 ATTCCCAATCCCAAAGATCAGACGGGACA---ACATTCCAAAGATCATATTGTAGAATAC 79276 ||||| |||||| | | || |||||||| | ||| |||| ||||| | Sbjct 52489 TATCCCAGTCCCAATACTTATTATCCACCTTCACATTCCACATGTCAAATTGAAGAATTC 52430 Query 79277 CGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCAC 79336 | | ||||| ||| | || |||||||||||||| | | || || ||||| | Sbjct 52429 CTTGGCTAGCTGGACTTCCAGGATACGTTTCATAAGGTCCATACACTTGTGCCAATTC-C 52371 Query 79337 AACTCGCC---TCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTT 79393 | | | | || ||||| | ||||| |||||||||||||| | ||||| | |||| Sbjct 52370 A--TGGACATTTCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTTATTTAATTCTT 52313 Query 79394 GTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 79452 ||| | | | ||| ||||||| | | || ||||| | ||| || || || || Sbjct 52312 TTGCAGAGTCAGAT-TCATATGGATATCTGAGTAGCATAAAGGTGTCCGCCAACCCCTGT 52254 Query 79453 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAA 79512 || || || || || ||||| ||||||||||| || | |||||||| | ||| || Sbjct 52253 ACTCCTATCCCTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCCTTCACAGGGTAG 52194 Query 79513 TAATTAATATCTATAATTTTATTGAGATTCCTGACT-ATTACTTTGACCACATCCTTTAG 79571 ||||| || || |||| || | ||| | || | || | |||| | || | || Sbjct 52193 TAATTTCGTTCGATTATTTGATCTAAATTAC-GAGTAATAATTTTGGTAATTTCGTAAAG 52135 Query 79572 TTTGAGAAAATCAAATCGTC------CATCTATTACAAACATGTTCAACGCGACAGATGC 79625 ||| ||||| ||| || | | ||||||| || ||| |||| || || Sbjct 52134 CTTGTTAAAATTGAATTCTCTTTTTTCCACATTTACAAATTTGCACAAGGCGATGGAAGC 52075 Query 79626 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTT 79685 || |||||| || || || |||| || | | ||||| || || ||| || | ||| Sbjct 52074 CAAATTACACACAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACAACACAAGTT 52015 Query 79686 ACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 79745 |||||| || ||||| || | ||| | ||||| || ||||| | ||||||||| Sbjct 52014 ACTACATTTGATGGTACCCAGATTCTTCTGATTCGATTTAGCATTACAAGAATCCTTATA 51955 Query 79746 AAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 79805 | ||| | ||| ||||||||| || ||| || || ||| || ||| | || | Sbjct 51954 CAACATGTAAGGAACACCAGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTTG 51895 Query 79806 AGCCTTTATTATAGACTTGTATC---TCTTTTCTCTTTCGTATTGTGTATATAATCGTTC 79862 ||| | | | || | | | |||||| ||| |||| | || | | ||| Sbjct 51894 TGCC---AGCACCGTTTTTTTCCCCATATTTTCTTCTTCATATTTTAAGTAGAGTTTTTC 51838 Query 79863 GAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCA 79922 ||| || |||||||| || ||| || |||||||| | || ||||| | | ||| Sbjct 51837 GAATTCTTCTCCCCATGACTCACTTAACCCTGGACATTCATTTGGGCACATGAGAGTCCA 51778 Query 79923 CTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 79982 | | || ||||| |||| |||||||| | ||||| | ||| | ||| ||| || Sbjct 51777 ATTTTGATTTTCCTTCACTCTCTTCATAAACAAGTCAGGTACCCACACAGCATAAAAAAG 51718 Query 79983 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 80042 ||||| | || | | || || || || ||| ||| | | ||| | || | | ||| Sbjct 51717 ATCTCGAGCTCGAAGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAAT 51658 Query 80043 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTG 80102 || |||||||| ||||| | || | || | | ||| || || |||||| || Sbjct 51657 GTCTGAATGCCATGGTTCAATATAAACTGCAAAAGACCCCTTTCTCTTTCCTCCTCCTTG 51598 Query 80103 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 80162 ||| | || ||||| || | |||| | || || | |||||| | | ||||||||| | Sbjct 51597 ATCCACATACCTAGCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCATTGGATAT 51538 Query 80163 ACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 80221 ||||| || || ||||| | | | | | ||||| | || || |||| Sbjct 51537 TCCATTTGTTCCTCTAATATATGAATTTTGT-CCTCTAATATCTTGTACTGCTACTCCTA 51479 Query 80222 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 80281 | || || || | || ||||| || ||| | |||| || ||| | || || || | Sbjct 51478 TCCCACCAGCTGTCTTGCTAATTAACGCACATTGCTTTAGTGTTTCAAATATACCTTCAA 51419 Query 80282 TGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 80341 | ||| ||||| || ||||||||| ||||||||| | | || || | Sbjct 51418 TCGAGTCAGATTTCATGCAGAGGAGAAAACAGGAAGACATTTGTGGCCTGGGCGTACCAG 51359 Query 80342 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 80401 ||| || |||||||| | ||| || || || | |||| |||| | || ||| |||| Sbjct 51358 AATTGAACAAGGTAGGTGTAGCATGTGTGAAATACTTTTGTGACATCAAATGGTATGTCT 51299 Query 80402 CAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGC 80460 | | || ||| | ||| ||| || || || || | || || | ||| | || || Sbjct 51298 CTAATGCCTTTTCCAAATCACCAATG-TGGATCCCAATCGATACTCTCATCAGCAGATGT 51240 Query 80461 TGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTA 80520 || |||| |||| || || ||| || | | ||| || |||| ||||| || Sbjct 51239 TGTGGTCGCTCAATTATTTTTCCATTAATACGAAGGAGGTATGACCTTTCTAAAGTCTTG 51180 Query 80521 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCC 80580 || |||||||||| || ||| |||||| |||| || || ||| ||| | ||| Sbjct 51179 AATCCAAAATAGTCATAGTTAAAATCTCGTGTGTAATCGATTTCCTTGTTCAGTCTGTCC 51120 Query 80581 TTATATT 80587 |||| || Sbjct 51119 TTATGTT 51113 >seq16 Length=409614 Score = 136 bits (150), Expect = 6e-27 Identities = 194/268 (72%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA-GC 50306 || ||| | ||||| ||||| ||||||| || || || || ||| ||| ||| || Sbjct 247780 CTGTACGTCTCCGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTA-AAATTTCTTTGC 247722 Query 50307 CTCGGTAATCTGCACTTCT-GTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGT 50365 || || || ||||||| ||| ||| | | || ||||||||||| || ||||| | Sbjct 247721 TTCCGTTATTTGCACTTGGCGTAAAAATTTGCTC-GCTAAATTTTCCAATACAATTCCAT 247663 Query 50366 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT 50425 |||||||||||||||| ||||| |||||||| |||||||||||||| || ||| || Sbjct 247662 CACTGGCTGCAAAAAAAGCCAACACATGTTTAATAAAATGTTTTTCATTTTCATTTAATT 247603 Query 50426 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485 | | |||| || | ||| |||| | || | ||| || ||||||| || || || | Sbjct 247602 TTTCGAAATCTTTTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCCAGAAGGACGCTT 247543 Query 50486 CTGCCTTTTTATACATATTCCAGATGTC 50513 | || |||||||| | || ||| | ||| Sbjct 247542 CCGCTTTTTTATAAAAATCCCACACGTC 247515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266573366720