Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq16 113 4e-20 >seq16 Length=409614 Score = 113 bits (124), Expect = 4e-20 Identities = 219/319 (69%), Gaps = 6/319 (2%) Strand=Plus/Minus Query 14098 TTTCAATAGCATTAAATAAAT--ATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14155 |||||||||||| ||| |||| |||| || | | || ||| | |||| | ||||| Sbjct 247845 TTTCAATAGCATGAAACAAATTCATTCTCTCCTTCTCGTCCTTTA--TGTAGTTGTCAAT 247788 Query 14156 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215 | |||||| ||| | || ||||| || ||||| | ||||| || || ||||| Sbjct 247787 TAATAAGCTGTACGTCTCCGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTAAAATTT 247728 Query 14216 TCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCG-GCCAAATTTTCATTAACTA 14274 | ||||||| ||| |||| | |||||| || | || |||||||| || | Sbjct 247727 CTTTGCTTCCGTTATTTGCACTTG-GCGTAAAAATTTGCTCGCTAAATTTTCCAATACAA 247669 Query 14275 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14334 | |||||||| ||||||||||| ||||| | | ||||||||| | || || | | | Sbjct 247668 TTCCATCACTGGCTGCAAAAAAAGCCAACACATGTTTAATAAAATGTTTTTCATTTTCAT 247609 Query 14335 TGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14394 | | ||||| |||| |||||| |||| | || | ||| ||| ||||||| || Sbjct 247608 TTAATTTTTCGAAATCTTTTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCCAGAAGG 247549 Query 14395 TAGCGACAGCTTTTTTATA 14413 || | ||||||||||| Sbjct 247548 ACGCTTCCGCTTTTTTATA 247530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479726512843200