Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq16 100 3e-16 >seq16 Length=409614 Score = 100 bits (110), Expect = 3e-16 Identities = 309/471 (66%), Gaps = 13/471 (3%) Strand=Plus/Minus Query 13736 GtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAG 13795 |||| || |||||||| || ||| ||| ||| ||| || || ||||| || || Sbjct 247992 GTTTCTTAAACCAAAAGATAGCACAGAAGCTTCCACTAAATAAAATGCCCTCGACACAAG 247933 Query 13796 CAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCC 13855 || |||| || | |||| |||| || | || | | ||||| |||||| |||| Sbjct 247932 CATTTGCTACTATCCTTTCTGCAAAGGA-GTTTGTATCGTTGAT--CCATTTGGCTGCCC 247876 Query 13856 ATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCT 13915 | | ||| || || | | || |||| || |||| || |||| || |||| Sbjct 247875 ACAACGCTTTGTTCTTCACAGCTGGAATATTTTCAATAGCATGAAACAAAT--TCATTCT 247818 Query 13916 CTT----TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 13971 || | || ||| | |||| | ||||| | |||||| ||| | || ||||| || Sbjct 247817 CTCCTTCTCGTCCTTTA--TGTAGTTGTCAATTAATAAGCTGTACGTCTCCGAGTGAATA 247760 Query 13972 TTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAG 14031 ||||| | ||||| || || ||||| | ||||| | ||| || | | | Sbjct 247759 TTTTCAACTGCTATTTGGAAGGAGTAAAATTTCTTTGCTTCCGTTATTTGCACTTG-GCG 247701 Query 14032 TAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAA 14090 ||||| || || || || ||||| ||||| |||||||| ||||||||||| ||||| Sbjct 247700 TAAAAATTTGCTCGCTAAATTTTCCAATACAATTCCATCACTGGCTGCAAAAAAAGCCAA 247641 Query 14091 TATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTT 14150 | | ||||||||| | || || | | || | ||||| |||| |||||| | Sbjct 247640 CACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCT 247581 Query 14151 AGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 ||| | || | ||| ||| ||||||| || || | ||||||||||| Sbjct 247580 AGACAAGTCAATTTCCTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTATA 247530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587316374720