Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11 223 5e-53 seq16 116 5e-21 >seq11 Length=477202 Score = 223 bits (246), Expect = 5e-53 Identities = 810/1256 (64%), Gaps = 20/1256 (2%) Strand=Plus/Minus Query 71428 TCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGG 71487 || ||||| ||||||| |||||||||||||| | ||||| | |||| ||| | | Sbjct 52361 TCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTTATTTAATTCTTTTGCA---GAG 52305 Query 71488 CTA---TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATA 71544 | ||| ||||||| | | || ||||| | ||| || || || || || || || Sbjct 52304 TCAGATTCATATGGATATCTGAGTAGCATAAAGGTGTCCGCCAACCCCTGTACTCCTATC 52245 Query 71545 CCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATA 71604 || || ||||||||||||||||| || | |||||||| | ||| || ||||| Sbjct 52244 CCTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCCTTCACAGGGTAGTAATTTCGT 52185 Query 71605 TCTATAATTTTATTGAGATTTCTGACTATTACTTT-GACCACATCCTTTAGTTTGAGAAA 71663 || || |||| || | ||| | || || || ||| | | || | || ||| ||| Sbjct 52184 TCGATTATTTGATCTAAATTAC-GAGTAATAATTTTGGTAATTTCGTAAAGCTTGTTAAA 52126 Query 71664 ATCAAAT-CTC------CCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTAC 71716 || ||| ||| ||| | ||||||| | |||||| | || |||| ||||| Sbjct 52125 ATTGAATTCTCTTTTTTCCACAT-TTACAAATTTGCACAAGGCGATGGAAGCCAAATTAC 52067 Query 71717 AAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACT 71776 | || || || |||| || | | ||||| ||||| ||| || | |||||||| | Sbjct 52066 ACACAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACAACACAAGTTACTACATT 52007 Query 71777 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAA 71836 ||||||| || | ||| | ||||| || ||||| | ||||||||| | || Sbjct 52006 TGATGGTACCCAGATTCTTCTGATTCGATTTAGCATTACAAGAATCCTTATACAACATGT 51947 Query 71837 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 71896 | ||| ||||||||| || ||| || || ||| || ||| | || | ||| | Sbjct 51946 AAGGAACACCAGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTTGTGCCAGCA 51887 Query 71897 TTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTC 71956 | || || | |||||| ||| |||| | || | | |||||| || |||| Sbjct 51886 CCGTTTTTTTCCCCATATTTTCTTCTTCATATTTTAAGTAGAGTTTTTCGAATTCTTCTC 51827 Query 71957 CCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCAT 72016 |||| | | ||| || ||||||||||| || ||||| | | ||| | | || | Sbjct 51826 CCCATGACTCACTTAACCCTGGACATTCATTTGGGCACATGAGAGTCCAATTTTGATTTT 51767 Query 72017 CATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 72076 | || |||| |||||||| | ||||| | ||| | ||| ||| ||||||| | || Sbjct 51766 CCTTCACTCTCTTCATAAACAAGTCAGGTACCCACACAGCATAAAAAAGATCTCGAGCTC 51707 Query 72077 TATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 72136 | | || || || || ||| ||| | | ||| | || | | ||| || ||||||| Sbjct 51706 GAAGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCTGAATGCC 51647 Query 72137 ACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATC 72196 | ||||| | || | || | | ||| | || |||||| ||||| | || | Sbjct 51646 ATGGTTCAATATAAACTGCAAAAGACCCCTTTCTCTTTCCTCCTCCTTGATCCACATACC 51587 Query 72197 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCC 72256 |||| || | |||| | || || | |||||| | | ||||||||| ||||| || | Sbjct 51586 TAGCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCATTGGATATTCCATTTGTTC 51527 Query 72257 CGGAGATATA-GCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCC 72315 | ||||| | | | | | ||||| | || || ||||| || || || Sbjct 51526 CTCTAATATATGAATTTTGT-CCTCTAATATCTTGTACTGCTACTCCTATCCCACCAGCT 51468 Query 72316 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 72375 | || ||||| || ||| | |||| || ||| | || || || || ||| Sbjct 51467 GTCTTGCTAATTAACGCACATTGCTTTAGTGTTTCAAATATACCTTCAATCGAGTCAGAT 51408 Query 72376 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 72435 ||||| || ||||||||| ||||||||| | | || || | ||| || ||| Sbjct 51407 TTCATGCAGAGGAGAAAACAGGAAGACATTTGTGGCCTGGGCGTACCAGAATTGAACAAG 51348 Query 72436 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGAT 72495 ||||| | ||| || || || | |||| |||| | || ||| ||||| | || | Sbjct 51347 GTAGGTGTAGCATGTGTGAAATACTTTTGTGACATCAAATGGTATGTCTCTAATGCCTTT 51288 Query 72496 TCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 || | ||| ||| || || || || | || || | ||| | || ||| || |||| || Sbjct 51287 TCCAAATCACCAATG-TGGATCCCAATCGATACTCTCATCAGCAGATGTTGTGGTCGCTC 51229 Query 72555 AACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 72614 || || || ||| || | | ||| || |||| ||||| || || |||||||| Sbjct 51228 AATTATTTTTCCATTAATACGAAGGAGGTATGACCTTTCTAAAGTCTTGAATCCAAAATA 51169 Query 72615 GTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATT 72670 || || ||| |||||| |||| || || || ||| | ||||||| || Sbjct 51168 GTCATAGTTAAAATCTCGTGTGTAATCGATTTCCTTGTTCAGTCTGTCCTTATGTT 51113 >seq16 Length=409614 Score = 116 bits (128), Expect = 5e-21 Identities = 186/262 (71%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG-GC 42411 || ||| | || || ||||| ||||||| || || || || ||| ||| ||| || Sbjct 247780 CTGTACGTCTCCGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTA-AAATTTCTTTGC 247722 Query 42412 CTCGGTAACCTGTACTTCT-GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT 42470 || || | || |||| ||| ||| | | || ||||||||||| || ||||| | Sbjct 247721 TTCCGTTATTTGCACTTGGCGTAAAAATTTGCTC-GCTAAATTTTCCAATACAATTCCAT 247663 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT 42530 |||||||||||||||| ||||| |||||||| ||||||| |||||| | |||||| Sbjct 247662 CACTGGCTGCAAAAAAAGCCAACACATGTTTAATAAAATGTTTTTCATTTTCATTTAATT 247603 Query 42531 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTT 42590 | | |||| || | ||| |||| | || | ||| || | ||||| || || |||| Sbjct 247602 TTTCGAAATCTTTTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCCAGAAGGACGCTT 247543 Query 42591 CTGCCTTTTTATACATATTCCA 42612 | || |||||||| | || ||| Sbjct 247542 CCGCTTTTTTATAAAAATCCCA 247521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137119468480