Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq10 104 3e-17 >seq10 Length=481316 Score = 104 bits (114), Expect = 3e-17 Identities = 218/321 (68%), Gaps = 3/321 (1%) Strand=Plus/Minus Query 70196 CCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCA 70255 |||||| |||||| || | |||| |||||||| |||||| | |||||||| Sbjct 82313 CCAACAAGTAGGAGAATTATCTTGTGTGCATGGAATGTAAAGGATTTGGATCAAATGGCT 82254 Query 70256 CTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTTA 70315 |||| || |||||| || ||| |||||| || ||||| ||| |||||||| | Sbjct 82253 TTACCTCCTTGTCACATCTTATGTCAATTTTACGTGTTTGATGGGAAACTGTCATGCATT 82194 Query 70316 ATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCT 70375 ||||||||||| | || |||| || || || || || ||||| || |||||| Sbjct 82193 ATGTATCAGAGATCTTGTGATTTGGGTCTTGGGGTCCCTTTCAACATCGCTTCCTATTCC 82134 Query 70376 ATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC-GCACGAGTTCGTACACAC 70434 || || || ||||||||||| || | | || | | |||| ||||| |||| | Sbjct 82133 ATATTCACACACATGATTGCACAGGTGTGCAATTTGCAGCCTGCAC-AGTTCATACATAT 82075 Query 70435 CATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACG 70494 | ||| | || ||||| || |||||||| || ||||| ||||| || ||| Sbjct 82074 TTTGGGCAATGCGCACGTCTACAACAATCACATAGACAGCTTAAAAGTGCAGCT-TAACA 82016 Query 70495 GGAGCCGAGACCTTTTCCCAA 70515 ||| || ||| ||||||| Sbjct 82015 GGATCCCCTACCCGTTCCCAA 81995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056902716480