Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq23 89.7 4e-13 >seq23 Length=358523 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||||||||||| | |||| | || |||||||| | || || || || | Sbjct 176676 CATCCTCCAATTGTTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGACTCCGTCCT 176735 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||| | ||||||| ||| || | || || || | ||||||||||| | || | Sbjct 176736 TATGTTCAATTTTTGATTTAACATTCCTAATGGTTTCGGATGGCTCCACATCCAGGGTGA 176795 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||| | ||| |||| || || || ||||||||||| Sbjct 176796 TGGTTCTTCCGCTTAATGTTTTTACGAATATTTGCAT 176832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776527684704