Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq16 116 3e-21 >seq16 Length=409614 Score = 116 bits (128), Expect = 3e-21 Identities = 355/541 (66%), Gaps = 11/541 (2%) Strand=Plus/Minus Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT--TGAAAATGTTAGACCC 13213 |||||| ||||||||||||||||| ||| |||| ||| || ||||| || || || Sbjct 248063 AAAATCTGTGTGCAATCCTTCATCTCGACTAATTAACTCATTACTGAAA--GTCAGGCCA 248006 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||| | |||| |||| |||||| |||||| || || ||| || || Sbjct 248005 TGCAACTTGTTTTGTTTCTTAAACCAAAAGATAGCACAGAAGCTTCCACTAAATAAAATG 247946 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 || || || ||| |||| | |||||| || | | ||| || | ||| Sbjct 247945 CCCTCGACACAAGCATTTGCTACTATCCTTTCTGCAAAGGAG---TTTGTATCGTTGATC 247889 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTTAAA 13392 || || ||||| ||||| | || || || | |||||||| || || | ||| Sbjct 247888 CATTTGGCTGCCCACAACGCTTTGTTCTTCACAGCTGGA-ATATTTTCAATAGCATGAAA 247830 Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452 |||| || | ||||| ||| || || | || || |||||||| ||| | || Sbjct 247829 CAAATTCATTCTCTCCTTCTCGTCCTTTATGTAGTTGTCAATTAATAAGCTGTACGTCTC 247770 Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512 || ||||||||||| | ||||||||||| ||||| | || || | || || Sbjct 247769 CGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTAAAATTTCTTTGCTTCCGTTATTTG 247710 Query 13513 AACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaa 13571 |||| || |||||| || || ||||| ||||| || || || ||||| || |||| Sbjct 247709 CACTT-GGCGTAAAAATTTGCTCGCTAAATTTTCCAATACAATTCCATCACTGGCTGCAA 247651 Query 13572 aaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTG 13631 ||||||| | | || |||||||| | |||||| ||||| || ||| ||||| Sbjct 247650 AAAAAGCCAACACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTT 247591 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 ||||| | || || || | |||||| | ||||| || || || | || || |||| Sbjct 247590 TTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTAT 247531 Query 13692 A 13692 | Sbjct 247530 A 247530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981097355696