Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq45 102 2e-16 seq23 95.1 3e-14 >seq45 Length=210479 Score = 102 bits (112), Expect = 2e-16 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||||||||||||||| || || ||||| |||||||| || ||||| ||| Sbjct 198056 CCATCTTCCAATTGTTTTCCAGCAAATATAAGTCTCTGCTGATCAGGTGGAATTCCCTCT 197997 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTC 104490 || |||||||| || |||||||||||||| Sbjct 197996 TTGTCCTGAATTTTCGCTTTTACATTTTC 197968 >seq23 Length=358523 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || ||||| || || ||||||| | | || | || || | |||| Sbjct 176630 TGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCCAATTGT 176689 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||| | | | ||||||||||| || ||||| || | ||| || |||| | ||| ||| Sbjct 176690 TTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGACTCCGTCCTTATGTTCAATTTTT 176749 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | ||| ||||| | ||| ||| || || || || || || || || | || | Sbjct 176750 GATTTAACATTCCTAATGGTTTCGGATGGCTCCACATCCAGGGTGATGGTTCTTCCGCTT 176809 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | ||||||||| ||||| ||||||||| Sbjct 176810 AATGTTTTTACGAATATTTGCATTTTG 176836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394741431584