Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq143 129 7e-25 >seq143 Length=21787 Score = 129 bits (142), Expect = 7e-25 Identities = 390/597 (65%), Gaps = 23/597 (4%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 ||||||||||| | || |||| | ||| ||| ||||||| || || |||||| Sbjct 4960 AATTTTGAAGAGCTAGGGATAGGAGCACTTGATGAAGAATTTAAGACCATATTTAGACGA 4901 Query 164458 GCATTTGCTTCTAGATCAGTT--CCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATA 164515 | ||||| ||| | || || | | | ||||| ||| || | || |||||| Sbjct 4900 ACCTTTGCAAGCAGA--ATTTACCCCAACTATATAATTAAACAACTGGGGATCAAACATG 4843 Query 164516 TAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCA 164575 |||| ||| | | || |||| || || || || ||||||||||| ||| || | Sbjct 4842 TAAAGGGACTCATTTTGTATGGGCCCCCGGGGACAGGAAAAACATTAATAGCTAGACAGA 4783 Query 164576 TTGCTCAAGCTTTTAAATCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACA 164635 | | | || | | || || || |||||| |||||||||| ||| |||| || | Sbjct 4782 TAGGTAAAACACTGAATGCGAGAGAACCAAAAATTATTAATGGTCCAGAAATATTAAATA 4723 Query 164636 AATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAAC 164695 |||||||||| ||||||||| ||| |||| || | ||| | || || || ||| Sbjct 4722 AATATGTAGGACAGTCAGAAGAAAATATTAGGAACCTATTTAAAGACGCAGAGCTGGAAT 4663 Query 164696 A-AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCT 164754 | ||| | || || | | | |||| |||| |||| || || || |||||| Sbjct 4662 ATAAACAGAGT-GGAGAAAATTCACAGCTACACATTATCATTTTAGACGAAATTGATGCT 4604 Query 164755 CTTTGCAAAAA---ACGTGGTGAT------------AATATTATTCATGAT-GCAGTGGT 164798 |||| | | | || ||| | | | | | | ||| ||| || | Sbjct 4603 ATTTGTCGACAGAGAGGTAGTGCTGCTTCAAGTGGGACTGGTGTAAACGATAGCATTG-T 4545 Query 164799 TAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGG 164858 |||||||| || || ||||| ||||||||| | ||| |||||||| | | | || Sbjct 4544 GAATCAGTTACTCTCCAAAATTGATGGTGTAAACAGCTTGAATAATATACTGCTGATCGG 4485 Query 164859 TATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATT 164918 |||||||||||| ||| |||||||||||||| | || |||| || |||| ||| | Sbjct 4484 AATGACCAACCGAATTGACTTAATTGATGATGCGCTGTTGAGACCCGGGAGATTCGAACT 4425 Query 164919 GAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCA 164975 | | ||||||||| | ||| | || || ||| | | |||||||| || |||| Sbjct 4424 GCACATAGAAATATCCCTCCCCAATAAGGAGGGAAGGATCCAAATTTTGAACATTCA 4368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595870152796800