Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq41 120 5e-23 >seq41 Length=232321 Score = 120 bits (132), Expect = 5e-23 Identities = 174/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| |||||||| ||||| ||| | ||| |||| | | ||||| | Sbjct 69971 GAGATAACATTCAAGGTATCACCAAACCAGCCATCAGACGTTTGGCCAGAAGAGGTGGTG 70030 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| |||| || ||| | || ||||| || | | || || || ||||||| Sbjct 70031 TGAAGCGTATCTCCGGTTTGATATACGAAGAAATCAGAGGAGTATTAAAAGTCTTCCTAG 70090 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||| || | ||| | || || || || ||||| || | ||||||||||| Sbjct 70091 AAAACGTAATTAAAGATTCCATCATGTACACTGAACACGCAAAGAGAAAGACTGTCACTG 70150 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATT-TATGGTTTTGGAAGT 16696 | ||||| || || || | |||||| | |||||| | || ||| |||||||| || || Sbjct 70151 CTATGGACATTGTGTACTCGTTGAAAAGACAAGGCAG-AACATTATATGGTTTCGGTGGT 70209 Query 16697 TAA 16699 ||| Sbjct 70210 TAA 70212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074973251864