Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq16 98.7 1e-15 >seq16 Length=409614 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/166 (73%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 21860 GCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATA 21919 || || ||||| ||| |||||||||||||| |||||||| ||||| | || ||| ||| Sbjct 247687 GCTAAATTTTCCAATACAATTCCATCACTGGCTGCAAAAAAAGCCAACACATGTTTAATA 247628 Query 21920 AAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACT 21979 |||| | ||| || || ||||||||| ||||| |||||| | || || || | | Sbjct 247627 AAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTAGACAAGTCAATT 247568 Query 21980 TCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCC 22025 || |||| |||||| ||| || || |||||||| | ||||| Sbjct 247567 TCCTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTATA-AAAATCC 247523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531899151107520