Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11 197 2e-45 seq16 118 1e-21 >seq11 Length=477202 Score = 197 bits (218), Expect = 2e-45 Identities = 808/1259 (64%), Gaps = 26/1259 (2%) Strand=Plus/Minus Query 62622 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CA 62679 || |||||| | ||||| ||||||||||| || | ||||||| |||| ||| || Sbjct 52361 TCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTTATTTAATTCTTTTGCAGAGTCA 52302 Query 62680 GGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATAC 62739 | | || ||||||| | | || ||||| | |||||| || || || || || || | Sbjct 52301 GATT--CATATGGATATCTGAGTAGCATAAAGGTGTCCGCCAACCCCTGTACTCCTATCC 52244 Query 62740 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 62799 | || ||||| ||||||||||| || | |||||||| | ||| || ||||| | Sbjct 52243 CTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCCTTCACAGGGTAGTAATTTCGTT 52184 Query 62800 CTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA- 62858 | || |||| || | ||| | ||| | |||| | || | || ||| |||| Sbjct 52183 CGATTATTTGATCTAAATTACGAGTAATAATTTTGGTAATTTCGTAAAGCTTGTTAAAAT 52124 Query 62859 TCAAATCGC------CCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAA 62912 | || || | ||| | ||||||| || |||||| | || |||| |||||| Sbjct 52123 TGAATTCTCTTTTTTCCA-CATTTACAAATTTGCACAAGGCGATGGAAGCCAAATTACAC 52065 Query 62913 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 62972 || || || |||| || | | ||||| || |||||| || | |||||||| ||| Sbjct 52064 ACAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACAACACAAGTTACTACATTTG 52005 Query 62973 ATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 63032 || || || | ||| | ||||| || ||||| | ||||||||| | ||| | Sbjct 52004 ATGGTACCCAGATTCTTCTGATTCGATTTAGCATTACAAGAATCCTTATACAACATGTAA 51945 Query 63033 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 63092 ||| ||||||||| || ||| || || ||| || ||| | || | ||| | Sbjct 51944 GGAACACCAGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTTGTGCC---AGC 51888 Query 63093 ATAGATTTGTATCTCC----TTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTC 63148 | | ||| | || || ||||| ||| ||| | || | | |||||| || || Sbjct 51887 ACCG-TTTTTTTCCCCATATTTTCTTCTTCATATTTTAAGTAGAGTTTTTCGAATTCTTC 51829 Query 63149 TCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63208 |||||| | || || |||||||||| || ||||| | | ||| | | | Sbjct 51828 TCCCCATGACTCACTTAACCCTGGACATTCATTTGGGCACATGAGAGTCCAATTTTGATT 51769 Query 63209 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 63268 |||||||||| |||||||| | ||||| | ||| | ||| ||| ||||||| | Sbjct 51768 TTCCTTCACTCTCTTCATAAACAAGTCAGGTACCCACACAGCATAAAAAAGATCTCGAGC 51709 Query 63269 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63328 || | |||| || || || ||| ||| | | ||| | || | | ||| || ||||| Sbjct 51708 TCGAAGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCTGAATG 51649 Query 63329 CCACGGTTCCAAGTATATGGCCATA-ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63387 ||| ||||| | || | || | | || || | ||| |||||| ||||| | | Sbjct 51648 CCATGGTTCAATATAAACTGCAAAAGACCCCTTTCTCTTT-CCTCCTCCTTGATCCACAT 51590 Query 63388 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63447 | ||||| || | |||| | || || | |||||| | | || || ||||| ||||| | Sbjct 51589 ACCTAGCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCATTGGATATTCCATTTG 51530 Query 63448 TACCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCT 63506 | || ||||| | | | | | ||||| | || || ||||| || || Sbjct 51529 TTCCTCTAATATATGAATTTTGT-CCTCTAATATCTTGTACTGCTACTCCTATCCCACCA 51471 Query 63507 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCA 63566 || | || ||||| || ||| | |||| || ||| | ||||| || || ||| Sbjct 51470 GCTGTCTTGCTAATTAACGCACATTGCTTTAGTGTTTCAAATATACCTTCAATCGAGTCA 51411 Query 63567 TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 63626 ||||| || ||||||||| ||||||||| | | || || | ||| || Sbjct 51410 GATTTCATGCAGAGGAGAAAACAGGAAGACATTTGTGGCCTGGGCGTACCAGAATTGAAC 51351 Query 63627 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63686 |||||||| | ||| || || || | |||| || | | || ||| ||||| | || Sbjct 51350 AAGGTAGGTGTAGCATGTGTGAAATACTTTTGTGACATCAAATGGTATGTCTCTAATGCC 51291 Query 63687 GAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63745 || | ||| ||| || || || || | | || | ||| | || || || |||| Sbjct 51290 TTTTCCAAATCACCAATG-TGGATCCCAATCGATACTCTCATCAGCAGATGTTGTGGTCG 51232 Query 63746 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63805 |||| || || || || | | ||| || |||| ||||| || || ||||| Sbjct 51231 CTCAATTATTTTTCCATTAATACGAAGGAGGTATGACCTTTCTAAAGTCTTGAATCCAAA 51172 Query 63806 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATT 63864 ||||| || ||| |||||| |||| || || ||| ||| | ||||||| || Sbjct 51171 ATAGTCATAGTTAAAATCTCGTGTGTAATCGATTTCCTTGTTCAGTCTGTCCTTATGTT 51113 >seq16 Length=409614 Score = 118 bits (130), Expect = 1e-21 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA-GC 33650 || ||| | ||||| ||||| ||||||| || || || || ||| ||| ||| || Sbjct 247780 CTGTACGTCTCCGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTA-AAATTTCTTTGC 247722 Query 33651 CTCGGTAATCTGTACTTCT-GTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGT 33709 || || || || |||| ||| ||| | | || || |||||||| || ||||| | Sbjct 247721 TTCCGTTATTTGCACTTGGCGTAAAAATTTGCTC-GCTAAATTTTCCAATACAATTCCAT 247663 Query 33710 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 33769 |||||||||||||||| ||||| |||||||| ||||||| |||||| | | ||| || Sbjct 247662 CACTGGCTGCAAAAAAAGCCAACACATGTTTAATAAAATGTTTTTCATTTTCATTTAATT 247603 Query 33770 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 33829 | | |||| || | ||| |||| | || | ||| || ||||||| || || || | Sbjct 247602 TTTCGAAATCTTTTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCCAGAAGGACGCTT 247543 Query 33830 CTGCCTTTTTATA 33842 | || |||||||| Sbjct 247542 CCGCTTTTTTATA 247530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945268863680