Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11 197 4e-45 seq10 136 1e-26 >seq11 Length=477202 Score = 197 bits (218), Expect = 4e-45 Identities = 501/761 (66%), Gaps = 6/761 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || || || || || ||| |||| |||| || | | ||||| |||||||| Sbjct 51328 TTCACACATGCTACACCTACCTTGTTCAATTCTGGTACGCCCAGGCCACAAATGTCTTCC 51387 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || ||||| || ||||| || || || || ||||| ||||| ||||| ||| | Sbjct 51388 TGTTTTCTCCTCTGCATGAAATCTGACTCGATTGAAGGTATATTTGAAACACTAAAGCAA 51447 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| | ||| ||||| || || || || || ||| | | || || || | | | Sbjct 51448 TGTGCGTTAATTAGCAAGACAGCTGGTGGGATAGGAGTAGCAGTACAAGATATTAGAGGA 51507 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 || || || ||| | || ||| ||| || |||||||| || || |||||| | Sbjct 51508 CAAAATTCATATATTAGAGGAACAAATGGAATATCCAATGGGCTAGTACCAATGCTTAGG 51567 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || ||| | |||| || ||||| || || || || ||||||||| | || ||| | ||| Sbjct 51568 GTATTTAATGATACAGCTAGGTATGTGGATCAAGGAGGAGGAAAGAGAAAGGGGTCTTTT 51627 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || | ||| | || || ||| | || |||||||| ||| | || | | ||||| Sbjct 51628 GCAGTTTATATTGAACCATGGCATTCAGACATTTTTGAATTTTTAGATTTAAGAAAAAAT 51687 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || || ||| | || || || ||||| || ||||| | ||||| ||||| Sbjct 51688 CATGGTAAGGAAGAACTTCGAGCTCGAGATCTTTTTTATGCTGTGTGGGTACCTGACTTG 51747 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 ||||||||| | ||| ||| | | | |||||| | ||| | |||||| | ||||||||| Sbjct 51748 TTTATGAAGAGAGTGAAGGAAAATCAAAATTGGACTCTCATGTGCCCAAATGAATGTCCA 51807 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 || | || |||||| || || | | || ||| ||| |||||| || Sbjct 51808 GGGTTAAGTGAGTCATGGGGAGAAGAATTCGAAAAACTCTACTTAAAATATGAA---GAA 51864 Query 364087 GGAAA---GGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 | ||| || || || | | ||||| | ||||||||||||| | | Sbjct 51865 GAAAATATGGGGAAAAAAACGGTGCTGGCACAAGATTTATGGTTTGCCATTTTACAAAGT 51924 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 || || || || || || || |||||||| || ||||| || || || || || Sbjct 51925 CAAATAGAAACTGGTGTTCCTTACATGTTGTATAAGGATTCTTGTAATGCTAAATCGAAT 51984 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||| || | || ||||| || | || ||| | ||| |||||||||||||| || Sbjct 51985 CAGAAGAATCTGGGTACCATCAAATGTAGTAACTTGTGTTGTGAGATTATTGAATATACA 52044 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 |||| || || || || ||||| | || || ||||| Sbjct 52045 TCTCCTGATGAAGTGGCTGTGTGTAATTTGGCTTCCATCGC 52085 >seq10 Length=481316 Score = 136 bits (150), Expect = 1e-26 Identities = 322/479 (67%), Gaps = 8/479 (2%) Strand=Plus/Minus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGT 111372 |||| || || | ||||| ||| | || || || ||||||| | |||||| | || | Sbjct 82618 ATTTCCCCCTATTAACAACCAAGAAATTATTTTTGAGGGGAATTATTGAAGAATTGCTTT 82559 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCA-AAAAATGTAAAAATTTGG 111431 |||| ||||| ||| ||||| | ||| | |||| | ||||| |||| || ||| Sbjct 82558 GGTTCATTCGAGGAGAAACAAACGGAAAC-ACCTTGTTAAACAAAAACGTAAGGATATGG 82500 Query 111432 GATGGAAATGGATCACGTGACTTTCTAGATT-CAGTTGGTCTTGTCGACAACGAAGAAGG 111490 || | ||||||| | | || || || || ||| | | || | | |||| Sbjct 82499 GAAGCAAATGGAACGAGGGAGTTCCTTGACAACAGGAAATTATTTC-ATAGAGAAGTGAA 82441 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 ||| | ||||| |||| || || || ||| | ||||||||||| || |||| || ||| Sbjct 82440 TGACTTGGGACCCATTTATGGTTTCCAGTGGAGACACTTTGGTGCTGAATACACAAACAT 82381 Query 111551 GCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAA 111610 ||| ||| || || | || || |||||| | ||||| ||| || ||| || Sbjct 82380 GCATGACAACTACGAGGATAAAGGTGTAGACCAATTAAAAAATGTTATTAATTTAATAAA 82321 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 || | ||||| | | | ||||| || |||||||||| ||| | ||||| | Sbjct 82320 AAATGAACCAACAAGTAGGAGAATTATCTTGTGTGCATGGAATGTAAAGGATTTGGATCA 82261 Query 111671 AATGGCACTTCCACCATGT--CATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTT 111728 |||||| | || || ||| |||||||||| || ||||| || || |||| || Sbjct 82260 AATGGCTTTACCTCCTTGTCACATCTTATGT--CAATTTTACGTGTTTGATGGGAAACTG 82203 Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGC 111787 |||||| ||||||||| ||||| |||| | |||||||| || || || || || || Sbjct 82202 TCATGCATTATGTATCAGAGATCTTGTGATTTGGGTCTTGGGGTCCCTTTCAACATCGC 82144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303349458593936