Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq16 131 2e-25 >seq16 Length=409614 Score = 131 bits (144), Expect = 2e-25 Identities = 198/279 (71%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 32937 TCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG 32996 ||||| || | || ||| | ||||| ||||| ||||||| || ||||| || ||| Sbjct 247792 TCAATTAATAAGCTGTACGTCTCCGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTAA 247733 Query 32997 AAGCATCTAGCCTCGGTAATCTGTACTTCT-GTACAAAATCGTTCTGCTAAATTTTCATT 33055 || | || || || || || |||| ||| ||| | | || ||||||||||| Sbjct 247732 AATTTCTTTGCTTCCGTTATTTGCACTTGGCGTAAAAATTTGCTC-GCTAAATTTTCCAA 247674 Query 33056 CACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 33115 || ||||| ||||||||||||||||| ||||| |||||||| ||||||| |||||| | Sbjct 247673 TACAATTCCATCACTGGCTGCAAAAAAAGCCAACACATGTTTAATAAAATGTTTTTCATT 247614 Query 33116 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 33175 | ||| ||| | |||| || | ||| |||| | || | ||| || ||||||| Sbjct 247613 TTCATTTAATTTTTCGAAATCTTTTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCCA 247554 Query 33176 AAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 33214 || || || || || |||||||| | || ||| | ||| Sbjct 247553 GAAGGACGCTTCCGCTTTTTTATAAAAATCCCACACGTC 247515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630035740800