Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq16 122 1e-22 >seq16 Length=409614 Score = 122 bits (134), Expect = 1e-22 Identities = 365/558 (65%), Gaps = 13/558 (2%) Strand=Plus/Minus Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 ||| || || || || ||||| ||||| || |||||||| ||||| || | || | Sbjct 248063 AAAATCTGTGTGCAATCCTTCATCTCGACTAATTAACTCATTACTGAAAGTCAGGCCATG 248004 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 ||| | ||||||| | |||||| || | | || || ||| ||| || || || Sbjct 248003 CAACTTGTTTTGTTTCTTAAACCAAAAGATAGCACAGAAGCTTCCACTAAATAAAATGCC 247944 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA---TTTGCGGAATTACTGCTGAT 93273 || || ||| ||| || || | ||| ||||| |||| || | |||| Sbjct 247943 CTCGACACAAGCATTTGCTACTATCCTTTCTGCAAAGGAGTTTG------TATCGTTGAT 247890 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 |||||| ||||| ||||| ||||| | | || | |||| ||||| | ||| Sbjct 247889 CCATTTGGCTGCCCACAACGCTTTGTTCTTCACAGCTGGAATATTTTCAATAGCATGAAA 247830 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 | | || ||| | | || |||||| | || ||||| | ||| | || Sbjct 247829 CAAATTCATTCTCTCCTTCTCGTCCTTTATGTAGTTGTCAATTAATAAGCTGTACGTCTC 247770 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA-GCTTCCGTGATCT 93452 || || | ||| || | ||| |||||||| ||| ||| ||| |||||||| || | Sbjct 247769 CGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTA-AAATTTCTTTGCTTCCGTTATTT 247711 Query 93453 GCACTTCTTGAGAAAATCT-CTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 |||||| | ||||| | ||| | | |||||| || || ||||| |||||| Sbjct 247710 GCACTTGGCGTAAAAATTTGCTCG-CTAAATTTTCCAATACAATTCCATCACTGGCTGCA 247652 Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG 93571 ||||||||||| | ||| || ||||||||||| |||| || || | || || |||| Sbjct 247651 AAAAAAGCCAACACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCT 247592 Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTG 93631 || ||| | || | || | ||| || | ||||| || || ||||| |||||||| Sbjct 247591 TTTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTA 247532 Query 93632 TACATATCCCATATGTCT 93649 || | |||||| | |||| Sbjct 247531 TAAAAATCCCACACGTCT 247514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859073731520