Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq10 105 6e-18 >seq10 Length=481316 Score = 105 bits (116), Expect = 6e-18 Identities = 274/407 (67%), Gaps = 12/407 (3%) Strand=Plus/Plus Query 20177 TCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTA 20236 ||||| || | ||||||| ||| |||| ||||| | || || |||| | || || Sbjct 82039 TCTATGTGATTGTTGTAGACGTGCGCATTGCCCAAAATATGTATGAACTGTGCAGG-CTG 82097 Query 20237 AGACCAGTA-ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGG 20295 | | | || || |||| ||| | || || | ||||||| || ||||| ||||| Sbjct 82098 CAAATTGCACACCTGTGCAATCATGTGTGTGAATATGGAATAGGAAGCGATGTTGAAAGG 82157 Query 20296 AACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGC 20355 || || | ||||| || | || |||||||||| || || || | || ||| Sbjct 82158 GACCCCAAGACCCAAATCACAAGATCTCTGATACATAATGCATGACAGTTTCCCATCAAA 82217 Query 20356 TACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGG 20415 || |||||||||||||| | |||||| || || | ||||| ||| ||| Sbjct 82218 CACGTAAAATTGACATAAGATGTGACAAGGAGGTAAAGCCATTTGATCCAAATCCTTTAC 82277 Query 20416 GTTCCACGCACACATAATGATTCTTCTA-TCGTGCGGATTATTTTTTATTAAATCCACAA 20474 ||||| ||||||| || ||||| ||| | || || | |||||||||||||| | || Sbjct 82278 ATTCCATGCACACAAGATAATTCTCCTACTTGT-TGGTTCATTTTTTATTAAATTAATAA 82336 Query 20475 TGTACGACAATTGGTC-AAACCCCTGGCCT-GTA-TAGTCA-GCATCCGCGTCCACGTAC 20530 | |||||||| | ||| | ||| ||| | |||| |||| || ||| Sbjct 82337 CATTTTTTAATTGGTCTACACCTTTATCCTCGTAGTTGTCATGCAT----GTTTGTGTAT 82392 Query 20531 GCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATC 20577 | || |||||||| |||||||||||||| |||| |||||||| || Sbjct 82393 TCAGCACCAAAGTGTCTCCACTGGAAACCATAAATGGGTCCCAAGTC 82439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441371431744320