Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq15 224 4e-53 seq6 197 5e-45 seq1 136 2e-26 seq16 127 8e-24 seq7 111 6e-19 >seq15 Length=432089 Score = 224 bits (248), Expect = 4e-53 Identities = 891/1379 (65%), Gaps = 60/1379 (4%) Strand=Plus/Minus Query 451172 TATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA-AC 451230 ||||| | ||||| || |||||||||| |||| |||| | ||||||| || | Sbjct 216422 TATGAAATTGTAAACCAGGAAGGAAAGCCAAATATAAGAGTACAG-ATAAAGGACAAGAA 216364 Query 451231 TAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGC 451290 | |||||||| || ||| ||||| |||||||| | ||||||||||||| ||| Sbjct 216363 GACGACTTTTGCCCCAGAACAAATTAGTGCTATGGTTTTAGAAAAAATGAAAGAAATAGC 216304 Query 451291 AGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAA 451350 || | | | || ||||||| ||||||| | ||||| || ||||||||||| Sbjct 216303 TCAATCCTTTTTGGGAAAGCCAGTTAAAAATGCAGTCGTCACTGTGCCAGCTTATTTCAA 216244 Query 451351 TGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCG 451410 |||||| || | |||||||| |||||||||||| |||||||||||||| || | || Sbjct 216243 TGATGCTCAGAGACAAGCAACGAAAGATGCAGGAACCATTGCTGGTTTAAACATTGTACG 216184 Query 451411 AATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC 451470 ||||| || ||||| || ||||| ||| | || |||||||| | | ||||| Sbjct 216183 TATTATAAACGAACCCACTGCAGCAGCTTTGGCTTATGGACTGG-------ACAAGAA-- 216133 Query 451471 AGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACT 451530 ||||| | | ||||| || | ||||| || |||||||| |||| || | || Sbjct 216132 GGAAGAGACGAGCATTTTGGTGTACGATTTAGGAGGAGGAACATTTGATGTGTCCATCCT 216073 Query 451531 TTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGG 451590 | ||||| |||| || || || || | || || || |||| || | ||||| Sbjct 216072 TGTCATTGACAATGGTGTGTTCGAGGTTTATGCCACTGCAGGAAATACCCACTTGGGAGG 216013 Query 451591 TGAAGATATTGATAATGCAATTGTGGAATGGTTGA-AAACTGATGTTCAACGAAAACTAA 451649 ||||| ||||| | | | |||| | || | ||| || | | |||||| || Sbjct 216012 AGAAGACTTTGATCAAAGAGTGATGGACTATTTTATAAAAATATTTAAGAAGAAAACCAA 215953 Query 451650 AAGTAGATATTTCTACTAACCAAAAAGCACTTAGACGTCTTAAAACATCAGCAGAAAAAG 451709 | |||| ||| | || | ||| ||| | || ||| | | | || ||| Sbjct 215952 CA-TAGA----TCTCAGATCCGATAAG-----AGAGCTATTCAAAAGTTAAGAAAAGAAG 215903 Query 451710 CTAAAATTACACTCAG---TTCAAC------ACAAACTACTAGTATAAACATTGATAGTT 451760 | ||||| || || || | | || ||||| || | ||||| Sbjct 215902 TTGAAATTGCAAAGAGAAATTTATCTGTAGTGCATTCTACTCAGATTGAAATTGAAGACA 215843 Query 451761 TAGTTGATGGA-ATGGATTATGCTACTACTCTTACCCGTGCTAAATTTGAATCAATTTGT 451819 | || || ||| || | || | || ||| | ||| | ||||| |||||| | ||| Sbjct 215842 TTGTAGAAGGACATAGCTT-TTCTGAAACTTTGACCAGAGCTAAGTTTGAA--GAATTGA 215786 Query 451820 TCCAGTATTTTTGCACGGGTA-ATGA-AACCTGTTGATCAAGTATTACATGATTCTAAAA 451877 | |||| | | | | || | |||| || | | ||| || ||||| | |||| Sbjct 215785 ATGATGATTTATTTAGAGAAACATTAGAACCCGTAAAGAAGGTACTAGATGATGC-AAAA 215727 Query 451878 TTAGTAAAGA-TAAAATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAA 451936 | | ||||| ||||| ||||| || || ||||||||||| ||||| || || || ||| Sbjct 215726 TATGAAAAGAGCAAAATAGATGAGATCGTTCTTGTAGGAGGATCTACTCGTATACCAAAA 215667 Query 451937 ATTCAAGATATGTTGTCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTA--AATC 451994 |||||| | || | | |||| || || ||| | |||| ||| || | Sbjct 215666 ATTCAACAAATTATAAAAGAATTTTTTAATGGTAAGGAAC-CTAATAGAG-GTATCAACC 215609 Query 451995 CTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATG 452054 | |||||||||||||||||||||||||| ||||||| | ||| | || || Sbjct 215608 CAGATGAAGCTGTTGCATATGGTGCTGCTATTCAAGCTGGAATT-----ATTTTGGGA-- 215556 Query 452055 ATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAA 452114 ||| ||||| |||| | | || ||||||| || || ||| | | ||| |||||| Sbjct 215555 --GAAGAATTACAAGATGTCGTCTTGCTAGATGTTACTCCACTAACGTTAGGAATTGAAA 215498 Query 452115 CAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGA 452174 | | ||| || || ||||| | | |||||| || || || || || || Sbjct 215497 CTGTTGGAGGTATCATGACCCAACTCATTAAAAGAAATACAGTCATCCCAACGAAGAAAT 215438 Query 452175 GTCAAACATTTAGTAC--AGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGA 452232 ||||| ||| ||| | ||| || || ||||||| ||| |||||||| ||||| Sbjct 215437 CACAAACCTTTTCTACGTACCAA--GACAATCAACCAGCTGTGTTAATTCAAGTATTTGA 215380 Query 452233 AGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACAT 452292 ||| ||| | ||| | || |||||| | | ||| ||||| || ||| ||| Sbjct 215379 AGGTGAAAGAGCATTAACCAAAGATAACCACCTGTTGGGAAAATTTGAACTCTCAGGCAT 215320 Query 452293 TCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGG 452352 || || | ||| ||| || |||||||| | || | || ||| |||||| Sbjct 215319 CCCACCAGCACAAAGAGGAGTACCAAAAATTGAAGTCACATTCACAGTAGATAAAAATGG 215260 Query 452353 TATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAA--AAATTACAATT 452410 ||| || | || |||| || ||| | |||||| || || || |||||| Sbjct 215259 TATCCTCCACGTAGAAGCAGAAGACAAAGGTACGGGAAAA--AGTAAGGGTATAACAATT 215202 Query 452411 ACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAA 452470 || ||||||||| | | || || ||| | ||||| |||||| | | || |||||| Sbjct 215201 ACAAATGATAAAGGAAGACTTTCCAAGGAACAAATTGAGAAAATGATTAACGATGCAGAA 215142 Query 452471 AAATTCAAGGATGATGATGAACAAGTTAGAAAACATGTTGAAGCTAAAAACAAACTAGA 452529 ||||| ||||| ||| || | | || || | || ||||| ||||| || || || Sbjct 215141 AAATTTGCAGATGAAGATAAAAATCTCCGAGAAAAAGTAGAAGCAAAAAATAACCTGGA 215083 >seq6 Length=557456 Score = 197 bits (218), Expect = 5e-45 Identities = 475/703 (68%), Gaps = 22/703 (3%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || || || ||||| ||||| ||||| | || || || || || | ||||| |||| Sbjct 521915 GCCATCGGTATTGACCTTGGTACCACATACTCCTGCGTCGGGGTATGGAGAAATGAAAAT 521856 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 ||||| || || || |||||||| ||| |||| ||||| || | || || || Sbjct 521855 GTAGATATCATTGCCAATGACCAGGGAAACAGAACCACTCCATCCTATGTTGCCTTCACT 521796 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAA-TGGTAAATTCAAATGCCAAA 451090 || |||| ||||| | || | || ||||| | ||| ||| || || || || Sbjct 521795 GACACAGAGAGACTAATCGGAGATGCCGCTAAGAACCAAGTGGCAAGG---AACCCCGAA 521739 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGA-TGATACTGTACA 451149 ||||| || | |||||| || | |||||||| | | || ||| | || |||| || Sbjct 521738 AACACTGTTTTTGATGCGAAGAGATTAATTGGAAGGAAGTTCACTGAATCAT-CTGTCCA 521680 Query 451150 AAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAA----AGGA-AAGCCCTAT 451204 | || | || || | | | || ||||| | || |||||| Sbjct 521679 GAGTGATATGAAGCACTGGCCCTTTACGGTC--AAATCCGGTGTTGATGAGAAGCCCATG 521622 Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 ||| | ||| ||| |||| || | ||| ||| || |||||||| || || ||| Sbjct 521621 ATTGAGGTATGCTATCAAGGAGAGAAGAAATTATTTCACCCAGAAGAAATCTCTTCCATG 521562 Query 451265 GTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTC-TCCAGTTACTGATG 451322 ||| || | ||| |||||||||| |||||| | | | || |||| ||| ||| Sbjct 521561 GTT-TTGCAAAAGATGAAAGAAAATGCAGAAGCGTTTTTAGGAAAGTCCA-TTAAAAATG 521504 Query 451323 CAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAG 451382 |||| || || || || |||||||| |||||| ||||| | ||||| || || ||||||| Sbjct 521503 CAGTCATCACCGTGCCAGCTTATTTTAATGATTCACAAAGACAAGCCACCAAGGATGCAG 521444 Query 451383 GACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAG 451442 | ||||||||||| ||||| | ||||||||||||| || || || |||||| | | Sbjct 521443 GTACCATTGCTGGTTTGAATGTCATGAGAATTATTAATGAGCCAACTGCTGCTGCTATTG 521384 Query 451443 CATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTG 451502 | || || || | | || ||||| || | ||||| || ||| | | || ||| ||| Sbjct 521383 CTTACGGTCT-GCACAA--AAAAGGAAAGGGTGAAAAGAACATTCTGATCTTCGATCTTG 521327 Query 451503 GTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGG 451562 | ||||||||| |||| ||| | | | ||||||||||| | ||||||||||||| Sbjct 521326 GAGGAGGAACTTTTGATGTATCTCTCTTAACTATTGAAGATGGTATTTTTGAAGTAAAGG 521267 Query 451563 CAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | || ||| || || || | ||||| |||||| ||||||| Sbjct 521266 CTACAGCTGGAGACACGCACTTGGGAGGAGAAGATTTTGATAA 521224 Score = 131 bits (144), Expect = 7e-25 Identities = 425/649 (65%), Gaps = 32/649 (5%) Strand=Plus/Minus Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTC 451953 ||| |||| ||||| || ||||| ||| ||||||| ||||||||| | | | Sbjct 520928 GAAGTTGTCCTTGTTGGTGGTTCCACAAGAATTCCCAAAATTCAAACACTCATTAAGGAG 520869 Query 451954 TTCTTATTTTGGAGGAAAACAACTATGTAAGAGCG-TAAATCCTGATGAAGCTGTTGCAT 452012 ||||| | ||||| || || | || || | || ||||||||||| ||||| | Sbjct 520868 TTCTTTAAT----GGAAAGGAAGCTTGCA-GATCGATCAACCCTGATGAAGCCGTTGCTT 520814 Query 452013 ATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT------TCAGATGATGAAAAATTAG 452066 ||||||| || || |||||||| ||| || | ||| || ||| || || Sbjct 520813 ATGGTGCAGCCGTACAAGCAGCCATTTTATCTGGTGACCAATCCAATGCTGTGCAA---- 520758 Query 452067 GAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAA 452126 || | || || ||||||| | ||||||| || | ||||| || || || Sbjct 520757 --GACTTGTTGCTATTAGATGTGTGTTCCTTATCTCTCGGTCTCGAAACCGCAGGAGGTG 520700 Query 452127 TGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTA 452186 | ||||| || | ||| | || || | || || || || ||||||| |||| Sbjct 520699 TCATGACCAAGCTGATTGAGAGAAATACCACCATCCCAGCAAAGAAAAGTCAAATCTTTA 520640 Query 452187 GTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAA 452246 || ||||||||||||||| || || ||||||| |||||||||| | || Sbjct 520639 CCACTTATGCTGATAACCAACCAGGAGTGTTGATCCAAGTGTATGAAGGAGAAAGAGCCC 520580 Query 452247 TGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAAC---ATTCCTCCTATGC 452303 | || |||||||| | | || ||||| | ||| | || || || || | Sbjct 520579 TAACTAAGGATAATAACTTATTGGGTAAATTT-CACTT--AGACGGTATCCCACCAGCTC 520523 Query 452304 CAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATG 452363 |||| | || |||||||| | || | ||| ||||||| |||||||| ||||| | Sbjct 520522 CAAGAAAAGTACCACAAATTGAGGTCACTTTTGACATTGATGCTAATGGTATCCTTAACG 520463 Query 452364 TGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAA 452422 | | ||| ||||||||||| | || ||| ||||| | || || ||||| |||||||| Sbjct 520462 TCACTGCTGTTGAAAAATCTACAGGCAAA-CAGAATCATATCACCATTACCAATGATAAG 520404 Query 452423 AACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGAT 452482 | || ||| |||||| ||||| ||||| | || || || || | ||| | Sbjct 520403 GGAAGATTGTCTCCAGAAGAAATTGATCGTATGGTGAACGACGCTGAGAAGTACAAAGCA 520344 Query 452483 GATGATGAACAAGTTAGAAAACA-TGTTGAAGCTAAAAACAAACTAGAA 452530 || |||||| || | |||||| ||||||| | ||||| || ||| Sbjct 520343 GAGGATGAAGAAAACA-AAAACAGAATTGAAGCCAGAAACAGCCTTGAA 520296 >seq1 Length=752713 Score = 136 bits (150), Expect = 2e-26 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 ||||||||||||||||| || | ||| | || ||| | | || || || || Sbjct 326006 AAAATGAAAGAAACAGCTGAGAATTATTTGGGAAGGAAAGTGCATCAAGCTGTTATCACA 326065 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || ||||| ||||||||| ||||| ||||||| || |||||||||||| | ||||| Sbjct 326066 GTACCTGCTTACTTCAATGATTCACAAAGGCAAGCTACAAAAGATGCAGGAAAAATTGCA 326125 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 ||||| |||| |||||||||||||| || || |||||||| || |||||| ||| || Sbjct 326126 GGTTTGGATGTCCTTCGAATTATTAACGAGCCAACAGCAGCGGCCTTAGCATTTGGGTTA 326185 Query 451454 GGAAA 451458 | ||| Sbjct 326186 GAAAA 326190 >seq16 Length=409614 Score = 127 bits (140), Expect = 8e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 496977 TGGGATTTATATaaaaaaaTGGAAGCAGCTTTTTGGACAGCTGAAGAAATAGATTGGTCT 497036 |||||||| ||||||||| |||||| | || ||||||||||| ||||| || | |||| Sbjct 247521 TGGGATTTTTATAAAAAAGCGGAAGCGTCCTTCTGGACAGCTGAGGAAATTGACTTGTCT 247580 Query 497037 AAAGATAAACATGATTTTAAAAAATTAAATCAAGATGAACAACGATTTATTAAATATGTA 497096 | ||| | | ||||| ||||||||||| || ||||| ||| ||||||||| |||| Sbjct 247581 AGCGATTTAAAAGATTTCGAAAAATTAAATGAAAATGAAAAACATTTTATTAAACATGTG 247640 Query 497097 TTAGCAtttttttCGGCAAGTGATACAATTGTA 497129 || || |||||| | || |||||| ||||||| Sbjct 247641 TTGGCTTTTTTTGCAGCCAGTGATGGAATTGTA 247673 >seq7 Length=544562 Score = 111 bits (122), Expect = 6e-19 Identities = 122/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 420789 ATCATATTTAGATAATCCAGTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGA 420848 ||||| |||| | | |||||| ||||||| ||| | ||||||||| | || | | Sbjct 112084 ATCATGTTTATAAATAGAAGTAAAAACAACAGATTTGGCAGGCATATTAATTCCCATGGC 112143 Query 420849 AAAAGTTTCAGTTGCTAACAAAACTTTAATTAAtttttttGAATAAAGAATTTCAACAAT 420908 ||| ||||| ||||| ||||||| ||||||||| ||||||| |||| || || ||||| Sbjct 112144 AAAGGTTTCCGTTGCAAACAAAATTTTAATTAACCCTTTTGAAAAAAGTATCTCCACAAT 112203 Query 420909 TTCTTTTAAAATAGGAATTATACCAGAATGATGATATGCCA 420949 |||||| || ||||||| || ||| ||||| ||| ||| Sbjct 112204 TTCTTTCAATATAGGAAGTAACCCACTGTGATG-TATTCCA 112243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975712122154784