Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq6 437 1e-117 seq11 132 6e-26 seq15 109 7e-19 seq16 91.5 2e-13 >seq6 Length=557456 Score = 437 bits (484), Expect = 1e-117 Identities = 1072/1599 (67%), Gaps = 36/1599 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || || | ||||| ||||| |||||| || Sbjct 520335 TTCATCCTCTGCTTTGTACTTCTCAGCGTCGTTCACCATACGATCAATTTCTTCTGGAGA 520394 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTT 6686 ||||| ||||||||||| ||||| || || | ||| | ||| || | | || || Sbjct 520395 CAATCTTCCCTTATCATTGGTAATGGTGATATGATTCTG-TTTGCCTGTAGATTTTTCAA 520453 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 ||||| | || || | |||||||| ||||||| || || | || | |||||||||| Sbjct 520454 CAGCAGTGACGTTAAGGATACCATTAGCATCAATGTCAAAAGTGACCTCAATTTGTGGTA 520513 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || || || | ||| ||||| ||| | |||| |||| | ||| | |||||| Sbjct 520514 CTTTTCTTGGAGCTGGTGGGATACCGTCTAAGTGAAATTTACCCAATAAGTTATTATCCT 520573 Query 6807 TCGCCTT----CTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCT 6862 | | || || | ||| |||||||| |||| || ||| | ||||| ||||| Sbjct 520574 TAG--TTAGGGCT--CTTTCTCCTTCATACACTTGGATCAACACTCCTGGTTGGTTATCA 520629 Query 6863 TGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACC 6922 || | |||||||| |||||| | ||| || || ||||||||| ||| | | Sbjct 520630 GCATAAGTGGTAAAGATTTGACTTTTCTTTGCTGGGATGGTGGTATTTCTCTCAATCAGC 520689 Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 |||||| | ||| || |||||||| || ||||| | | ||| || || || Sbjct 520690 TTGGTCATGACACCTCCTGCGGTTTCGAGACCGAGAGATAAGGAACACACATCTAATAGC 520749 Query 6983 AACAGGTCTTGAACAG-ATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 |||| |||||| |||| ||| | | | |||| | ||| ||||| ||||| || | || Sbjct 520750 AACAAGTCTTGCACAGCATTGGATTGGT-CACCAGATAAAATGGCTGCTTGTACGGCTGC 520808 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 || || || || || ||||| ||||| |||| | | ||| || || ||||| | Sbjct 520809 ACCATAAGCAACGGCTTCATCAGGGTTGATCGATCTGCAAGCTTCCTTTCCATTAAAGAA 520868 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| | | | ||||||||| || |||| ||| || ||||| || | || | ||| Sbjct 520869 CTCCTTAATGAGTGTTTGAATTTTGGGAATTCTTGTGGAACCACCAACAAGGACAACTTC 520928 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 | || || || || ||| ||| ||| | || || ||||| | | Sbjct 520929 GTGGACGCTCTTCTTGTCCATCATTGCATCTTTCAACACCTTCTCAACAGGAATTAAAGT 520988 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGG--ATG-TATA 7278 | |||||| | || ||||| ||||||||||| | || | | | | | | | | || Sbjct 520989 GTCACGGAAATAATCAATACATAGTTCCTCAAATCTGGCTCTGCTTACTGTCACGCTGTA 521048 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 | || | || || | | ||||||||||| ||||| | ||||| | || ||||| Sbjct 521049 G---TCGATACCTTCAAAAAGGGAATCAATTTCGATGGTGGCTTGTGTGGAGGAGGATAA 521105 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || ||||| || | |||||| |||||||| | | | || | || || Sbjct 521106 AGTACGCTTGGCTCTTTCACACTGAGTTCGTAATCTTCTTAAAGCTCTGCTATTCTTAGA 521165 Query 7399 AATATCTTT--CT-TATGTTTACGTTTAAACTCTTCAG---AGAAGTGTCGAAGGAGTCT 7452 | ||| || || ||| ||| | |||||| |||||| | |||| || | | ||| Sbjct 521166 TAAATCCTTTCCTCTATTTTTTCTTTTAAAGTCTTCAACACAAAAGT-TC--ACCAATCT 521222 Query 7453 CGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGAT 7512 ||| |||||||| || |||||||| || || || || || || || |||||||| || Sbjct 521223 GTTATCAAAATCTTCTCCTCCCAAGTGCGTGTCTCCAGCTGTAGCCTTTACTTCAAAAAT 521282 Query 7513 ACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAG 7572 ||| ||||||| |||| | || |||||||| || || || || || || || || || Sbjct 521283 ACCATCTTCAATAGTTAAGAGAGATACATCAAAAGTTCCTCCTCCAAGATCGAAGATCAG 521342 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | |||| | || | | | || || | |||||||| || ||||| || || ||||| Sbjct 521343 AATGTTCTTTTCACCCTTTCCTTTTTTGTGCAGACCGTAAGCAATAGCAGCAGCAGTTGG 521402 Query 7633 TTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 ||||||||||| | | |||| |||| |||||||| || | ||||| || || |||| Sbjct 521403 CTCATTAATAATTCTCATGACA-TTCAAACCAGCAATGGTACCTGCATCCTTGGTGGCTT 521461 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 ||| ||| ||||| ||||| || || || || || | ||| || | | | ||| | Sbjct 521462 GTCTTTGTGAATCATTAAAATAAGCTGGCACGGTGATGACTGCATTTTTAATGGACTTTC 521521 Query 7752 CGAGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 | | | ||| ||| || | |||||||| ||| | || |||||| || || || ||||| Sbjct 521522 CTAAAAACGCTTCTGCATTTTCTTTCATCTTTTGCAA-AACCATGGAAGAGATTTCTTCT 521580 Query 7811 GCCGCAAACTGTTTCGTTTCACCGTTAAAATCA-ACTTCAATCATGGGTTTATCCGCAGC 7869 | ||| |||| | || || || | | || || ||||||||||| || || || | Sbjct 521581 GGGTGAAATAATTTCTTCTCTCC-TTGATAGCATACCTCAATCATGGGCTTCTCATCAAC 521639 Query 7870 ACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAA 7929 ||||| | ||| || | | ||| | |||||||| ||||| | || | || Sbjct 521640 ACCGGATTTGACCGTAAAGGGCCAGTGCTTCATATCACTCTGGACAGATGATTCAGTGAA 521699 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 ||| ||||| || | | ||| ||||||||||| ||||||| ||||||| | || ||| Sbjct 521700 CTTCCTTCCAATTAATCTCTTCGCATCAAAAACAGTGTTTTCGGGGTTCCTTGCCACTTG 521759 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 |||||| || || || ||||| || | || | | || || || || || || ||||| Sbjct 521760 GTTCTTAGCGGCATCTCCGATTAGTC--TC-TCTGTGTCAGTGAAGGCAACATAGGATGG 521816 Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCC 8109 || |||| || || ||||| || ||||| || ||||| || ||| ||| || || Sbjct 521817 AGTGGTTCTGTTTCCCTGGTCATTGGCAATGATATCTACATTTTCATTTCTCCATACCCC 521876 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||||| || || || || || | ||||||||||| || Sbjct 521877 GACGCAGGAGTATGTGGTACCAAGGTCAATACCGATGGC 521915 >seq11 Length=477202 Score = 132 bits (146), Expect = 6e-26 Identities = 291/431 (68%), Gaps = 9/431 (2%) Strand=Plus/Minus Query 105568 TTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCC--TCTT 105625 ||||| ||||| || || | ||||| || |||| || |||||| |||| |||| Sbjct 51755 TTCATAAACAAGTCAGGTACCCACACAGCATAAAAAAGATCTCGAG--CTCGAAGTTCTT 51698 Query 105626 CATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTA 105685 | | ||| ||||| | | || | ||| || | ||| || | ||||||||||| | Sbjct 51697 CCTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCTGAATGCCATGGTTCAA 51638 Query 105686 AATAGACTGCAATAGACCCTTTACGA---CGCCCCGCTTGATTGACATATCTTGCGGTTG 105742 ||| ||||||| |||||| || | | || |||||| ||||| || || || Sbjct 51637 TATAAACTGCAAAAGACCCCTTTCTCTTTCCTCCTCCTTGATCCACATACCTAGCTGTAT 51578 Query 105743 AGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATAT 105802 ||| | || | | |||||| | | |||| |||| ||||||||||||| | ||||| Sbjct 51577 CATTAAATACCCTAAGCATTGGTACTAGCCCATTGGATATTCCATTTGTTCCTCTAATAT 51518 Query 105803 GTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGA 105862 ||| || | | | | | ||| || || || || || || ||||| ||| || | Sbjct 51517 ATGAATTTTGTCCTCTAATATCTTGTACTGCTACTCCTATCCCACCAGCTGTCTTGCTAA 51458 Query 105863 TACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCA- 105921 | |||||| | |||| ||| || | ||||| || || || || | ||| Sbjct 51457 TTAACGCACATTGCTTTAGTGTTTCAAATATACCTTCAATCGAGTCAGATTTCAT-GCAG 51399 Query 105922 ATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTT 105981 | || ||||| || ||||||||||| ||||| ||||||| |||||||| || ||||| Sbjct 51398 AGGAGAAAACAGGAAGACATTTGTGGCCTGGGCGTACCAGAATTGAACAAGGTAGGTGTA 51339 Query 105982 GCATGAATGAA 105992 ||||| |||| Sbjct 51338 GCATGTGTGAA 51328 >seq15 Length=432089 Score = 109 bits (120), Expect = 7e-19 Identities = 220/327 (67%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || ||||| || |||||||| |||| || || || || | || || || | ||| Sbjct 216000 ATCAAAGTCTTCTCCTCCCAAGTGGGTATTTCCTGCAGTGGCATAAACCTCGAACACACC 216059 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 |||||| | | || |||||||| || || || || | || | | | | Sbjct 216060 ATTGTCAATGACAAGGATGGACACATCAAATGTTCCTCCTCCTAAATCGTACACCAAAAT 216119 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | |||| || || | |||| || || || || || | ||| || || || ||||| Sbjct 216120 GCTCGTCTCTTCCT------TCTTGTCCAGTCCATAAGCCAAAGCTGCTGCAGTGGGTTC 216173 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || |||||||| | | ||| | |||||||| ||| | ||||||||||| ||||||| Sbjct 216174 GTTTATAATACGTACAATGTTTAAACCAGCAATGGTTCCTGCATCTTTCGTTGCTTGTCT 216233 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | ||| || || || || || || || ||||| || | | ||| ||| || | Sbjct 216234 CTGAGCATCATTGAAATAAGCTGGCACAGTGACGACTGCATTTTTAACTGGCTTTCCCAA 216293 Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782 | | |||| || || ||||||||||| Sbjct 216294 AAAGGATTGAGCTATTTCTTTCATTTT 216320 >seq16 Length=409614 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 115731 TATATTTTCAAAAACTATACCATCAGAACCAGCaaaaaaaGCTAAAATATATTTTATAAA 115790 || |||||| || || || |||||| | ||||||||||| || | || ||| ||||| Sbjct 247685 TAAATTTTCCAATACAATTCCATCACTGGCTGCAAAAAAAGCCAACACATGTTTAATAAA 247626 Query 115791 ATGTTTTTCATTATCACTTAATTCATTCCAATCATCCATATCTTTGGAAAAGTCTATCTC 115850 |||||||||||| ||| |||||| | |||| | | ||| | || ||||| || || Sbjct 247625 ATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTAGACAAGTCAATTTC 247566 Query 115851 TTCAGCGGTCCAATTTGACATTTGGGCCTTTTTATACAAA 115890 ||||| ||||| ||| || || |||||||| ||| Sbjct 247565 CTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTATAAAAA 247526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130831088320