Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11 143 3e-29 >seq11 Length=477202 Score = 143 bits (158), Expect = 3e-29 Identities = 840/1331 (63%), Gaps = 22/1331 (2%) Strand=Plus/Plus Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 || ||||||||| | |||||| | |||| |||| || || ||||| ||| | || Sbjct 51295 TTAGAGACATACCATTTGATGTCACAAAAGTAT-TTCACACATGCTACACCTACCTTGTT 51353 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTAT-TGCAAACAAGGAGG 111789 ||| ||||||| || || || |||||||| ||||| || | |||| || | Sbjct 51354 CAATTCTGGTACGCCCAGGCCACAAATGTCTTCCTGTTTTCTCCTCTGCATGAAATCTG- 51412 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || || | || || | | || || | ||||||| ||| ||| |||| Sbjct 51413 ACTCGATTGAAGGTATATTTGAAACACTAAAGCAATGTGCGTTAATTAGCAAGACAGCTG 51472 Query 111850 GTGGTATCGGGAT-GCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 |||| || || | ||| | || ||| | |||| | || || ||||||||| ||| Sbjct 51473 GTGGGATAGGAGTAGCAG-TACAAGATATTAGAGGACAAAATTCATATATTAGAGGAACA 51531 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 ||||| ||| |||| | | ||||||||| | |||||||| | ||||| | ||| Sbjct 51532 AATGGAATATCCAATGGGCTAGTACCAATGCTTAGGGTATTTAATGATACAGCTAGGTAT 51591 Query 111969 GTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || | |||| || | | ||||| ||| | ||||| ||| |||| |||||||| Sbjct 51592 GTGGATCAAGGAGGAGGAAAGAGAAAGGGGTCTTTTGCAGTTTATATTGAACCATGGCAT 51651 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 | || || | || || | || || | || || ||| | || || || Sbjct 51652 TCAGACATTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAGGAAGAACTTCGAGCT 51711 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || ||||| || | ||| | ||| | || || | || ||||||||||| |||| | | Sbjct 51712 CGAGATCTTTTTTATGCTGTGTGGGTACCTGACTTGTTTATGAAGAGAGTGAAGGAAAAT 51771 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 |||||| ||||| | || ||| | | || || | || | ||| || Sbjct 51772 CAAAATTGGACTCTCATGTGCCCAAATGAATGTCCAGGGTTAAGTGAGTCATGGGGAGAA 51831 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCA 112265 || || ||| |||||| ||| || || ||||||| | || || ||||||| Sbjct 51832 GAATTCGAAAAACTCTACTTAAAATATGAAGAAGAAAATATGGGGAAAAAAACGGTGCTG 51891 Query 112266 GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATG 112325 || ||| | ||| || ||| | | ||||| || |||||| || || ||| Sbjct 51892 GCACAAGATTTATGGTTTGCCATTTTACAAAGTCAAATAGAAACTGGTGTTCCTTACATG 51951 Query 112326 CTTTACAAAGACGCCTGTAAC-CAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 112384 | || || || | ||||| | ||| | ||||| |||||| ||||| ||||| | Sbjct 51952 TTGTATAAGGATTCTTGTAATGCTAAATCG-AATCAGAAGAATCTGGGTACCATCAAATG 52010 Query 112385 TTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 112444 | ||| | ||| || || | |||| |||| ||||| |||||||||||| Sbjct 52011 TAGTAACTTGTGTTGTGAGATTATTGAATATACATCTCCTGATGAAGTGGCTGTGTGTAA 52070 Query 112445 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA-AGACATTTGATTATG 112503 | || || ||||| | ||| | ||| || || | || ||| ||| ||| | Sbjct 52071 TTTGGCTTCCATCGCCTTGTGCAAATTTGTAAATGTGGAAAAAAGAGA-ATTCAATTTTA 52129 Query 112504 AAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAA 112563 | || || ||||| |||| |||| | | || || || | | | || || ||| Sbjct 52130 ACAAGCTTTACGAAATTACCAAAATTATTACTCGTAATTTAGATCAAATAATCGAACGAA 52189 Query 112564 ATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCG 112623 ||| ||||| || || ||| | || |||| ||||||| | || || || | | Sbjct 52190 ATTACTACCCTGTGAAGGAAGCTGAGAGGTCCAATAAGAGACACAGACCCATAGGGATAG 52249 Query 112624 GTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAG 112683 | || || || | ||||| || || || | | ||| ||| || ||| | Sbjct 52250 GAGTACAGGGGTTGGCGGACACCTTTATGCTACTCAGATATCCATATGAATCTGACTCTG 52309 Query 112684 CGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTT 112743 | || ||| | ||| | || || || || |||||| | || || | || | Sbjct 52310 CAAAAGAATTAAATAAAAGAATTTTCGAAACCATGTATTATGCTGCATTGGAAATGTCCA 52369 Query 112744 CGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAG 112803 ||| |||||| | || |||| || |||||||| | | || ||||||| |||| Sbjct 52370 TGGAATTGGCACAAGTGTATGGACCTTATGAAACGTATCCTGGAAGTCCAGCTAGCCAAG 52429 Query 112804 GGGTGCTTCAATTTGATATGTGG-----GAAGGT-GAGACCAAGCTTCACTACGACTGGG 112857 | | ||||||||||| |||||| |||||| || | ||| | | ||||||| Sbjct 52430 GAATTCTTCAATTTGACATGTGGAATGTGAAGGTGGATAATAAG---TATTGGGACTGGG 52486 Query 112858 ACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAA 112917 | ||||||| || || ||| | | || | | || ||| ||| | || |||| Sbjct 52487 ATAAACTCAAGGCACAAATAAAGAAACACGGATTGAGGAATTCTCTCTTGCTTGCTCCAA 52546 Query 112918 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 112977 |||| || || ||||| |||| ||| |||| || ||||||| ||||| || ||||| | Sbjct 52547 TGCCTACTGCTTCCACGTCACAGATCCTGGGCAACAATGAATCTTTTGAGCCATACACAA 52606 Query 112978 CGAACATCTAT 112988 || || ||| Sbjct 52607 GTAATATTTAT 52617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740475698560